Strain Fitness in Variovorax sp. SCN45 around GFF5928

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5927 and GFF5928 overlap by 4 nucleotidesGFF5928 and GFF5929 are separated by 25 nucleotidesGFF5929 and GFF5930 are separated by 21 nucleotides GFF5927 - 3-oxoacyl-[ACP] synthase, at 142,200 to 143,237 GFF5927 GFF5928 - hypothetical protein, at 143,234 to 144,346 GFF5928 GFF5929 - Mll2356 protein, at 144,372 to 144,854 GFF5929 GFF5930 - VgrG protein, at 144,876 to 147,254 GFF5930 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.447 kb on + strand, within GFF5927at 142.447 kb on + strand, within GFF5927at 142.448 kb on - strand, within GFF5927at 143.620 kb on - strand, within GFF5928at 143.620 kb on - strand, within GFF5928at 143.679 kb on + strand, within GFF5928at 143.679 kb on + strand, within GFF5928at 143.745 kb on + strand, within GFF5928at 143.745 kb on + strand, within GFF5928at 143.745 kb on + strand, within GFF5928at 143.745 kb on + strand, within GFF5928at 143.746 kb on - strand, within GFF5928at 143.749 kb on + strand, within GFF5928at 143.865 kb on + strand, within GFF5928at 143.865 kb on + strand, within GFF5928at 143.865 kb on + strand, within GFF5928at 143.865 kb on + strand, within GFF5928at 143.866 kb on - strand, within GFF5928at 143.866 kb on - strand, within GFF5928at 143.866 kb on - strand, within GFF5928at 143.866 kb on - strand, within GFF5928at 143.926 kb on - strand, within GFF5928at 144.022 kb on - strand, within GFF5928at 144.132 kb on + strand, within GFF5928at 144.132 kb on + strand, within GFF5928at 144.132 kb on + strand, within GFF5928at 144.132 kb on + strand, within GFF5928at 144.133 kb on - strand, within GFF5928at 144.133 kb on - strand, within GFF5928at 144.133 kb on - strand, within GFF5928at 144.433 kb on + strand, within GFF5929at 144.433 kb on + strand, within GFF5929at 144.434 kb on - strand, within GFF5929at 144.860 kb on + strandat 144.860 kb on + strandat 144.861 kb on - strandat 145.310 kb on + strand, within GFF5930at 145.311 kb on - strand, within GFF5930

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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142,447 + GFF5927 0.24 -2.7
142,447 + GFF5927 0.24 +0.6
142,448 - GFF5927 0.24 -1.8
143,620 - GFF5928 0.35 +0.4
143,620 - GFF5928 0.35 +0.4
143,679 + GFF5928 0.40 +0.0
143,679 + GFF5928 0.40 -0.1
143,745 + GFF5928 0.46 -0.1
143,745 + GFF5928 0.46 +0.5
143,745 + GFF5928 0.46 +0.6
143,745 + GFF5928 0.46 -0.3
143,746 - GFF5928 0.46 +1.0
143,749 + GFF5928 0.46 +0.0
143,865 + GFF5928 0.57 +0.4
143,865 + GFF5928 0.57 +0.6
143,865 + GFF5928 0.57 -1.6
143,865 + GFF5928 0.57 -1.5
143,866 - GFF5928 0.57 -0.1
143,866 - GFF5928 0.57 +0.5
143,866 - GFF5928 0.57 -1.6
143,866 - GFF5928 0.57 +0.9
143,926 - GFF5928 0.62 -1.1
144,022 - GFF5928 0.71 -0.2
144,132 + GFF5928 0.81 -0.3
144,132 + GFF5928 0.81 +0.8
144,132 + GFF5928 0.81 +0.2
144,132 + GFF5928 0.81 -0.9
144,133 - GFF5928 0.81 +0.5
144,133 - GFF5928 0.81 +0.7
144,133 - GFF5928 0.81 +1.0
144,433 + GFF5929 0.13 +0.2
144,433 + GFF5929 0.13 -0.2
144,434 - GFF5929 0.13 +0.0
144,860 + +1.3
144,860 + -0.7
144,861 - +0.1
145,310 + GFF5930 0.18 +0.7
145,311 - GFF5930 0.18 +0.0

Or see this region's nucleotide sequence