Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5909 and GFF5910 overlap by 10 nucleotides GFF5910 and GFF5911 are separated by 37 nucleotides GFF5911 and GFF5912 are separated by 11 nucleotides GFF5912 and GFF5913 are separated by 240 nucleotides
GFF5909 - Selenophosphate synthetase-related protein MJ0640, at 124,697 to 125,704
GFF5909
GFF5910 - NAD/NADP transhydrogenase alpha subunit, at 125,695 to 125,979
GFF5910
GFF5911 - Probable L-amino-acid oxidase (EC 1.4.3.2), at 126,017 to 127,324
GFF5911
GFF5912 - Two-component transcriptional response regulator, LuxR family, but with unusual receiver domain, at 127,336 to 128,013
GFF5912
GFF5913 - T6SS outer membrane component TssL (ImpK/VasF) / unknown domain, at 128,254 to 129,597
GFF5913
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1
2 at 125.235 kb on - strand, within GFF5909 at 125.798 kb on - strand, within GFF5910 at 126.048 kb on - strand at 126.407 kb on + strand, within GFF5911 at 126.516 kb on - strand, within GFF5911 at 126.516 kb on - strand, within GFF5911 at 126.659 kb on + strand, within GFF5911 at 126.660 kb on - strand, within GFF5911 at 126.701 kb on + strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.702 kb on - strand, within GFF5911 at 126.704 kb on + strand, within GFF5911 at 126.704 kb on + strand, within GFF5911 at 126.705 kb on - strand, within GFF5911 at 126.764 kb on + strand, within GFF5911 at 126.764 kb on + strand, within GFF5911 at 126.833 kb on + strand, within GFF5911 at 126.834 kb on - strand, within GFF5911 at 126.834 kb on - strand, within GFF5911 at 126.917 kb on + strand, within GFF5911 at 126.917 kb on + strand, within GFF5911 at 126.918 kb on - strand, within GFF5911 at 126.918 kb on - strand, within GFF5911 at 126.918 kb on - strand, within GFF5911 at 127.169 kb on + strand, within GFF5911 at 127.169 kb on + strand, within GFF5911 at 127.169 kb on + strand, within GFF5911 at 127.169 kb on + strand, within GFF5911 at 127.170 kb on - strand, within GFF5911 at 127.649 kb on + strand, within GFF5912 at 127.649 kb on + strand, within GFF5912 at 127.650 kb on - strand, within GFF5912 at 127.703 kb on + strand, within GFF5912 at 127.703 kb on + strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 128.046 kb on + strand at 128.062 kb on + strand at 128.063 kb on - strand at 128.110 kb on - strand at 128.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 125,235 - GFF5909 0.53 +2.0 125,798 - GFF5910 0.36 +1.2 126,048 - -0.7 126,407 + GFF5911 0.30 -0.3 126,516 - GFF5911 0.38 +0.8 126,516 - GFF5911 0.38 +1.6 126,659 + GFF5911 0.49 +0.4 126,660 - GFF5911 0.49 -0.0 126,701 + GFF5911 0.52 +1.8 126,702 - GFF5911 0.52 +0.4 126,702 - GFF5911 0.52 -0.3 126,702 - GFF5911 0.52 +0.4 126,704 + GFF5911 0.53 -1.3 126,704 + GFF5911 0.53 -0.3 126,705 - GFF5911 0.53 -0.8 126,764 + GFF5911 0.57 +0.8 126,764 + GFF5911 0.57 +0.9 126,833 + GFF5911 0.62 +1.4 126,834 - GFF5911 0.62 +0.4 126,834 - GFF5911 0.62 -0.4 126,917 + GFF5911 0.69 -0.5 126,917 + GFF5911 0.69 +0.4 126,918 - GFF5911 0.69 +0.1 126,918 - GFF5911 0.69 -0.2 126,918 - GFF5911 0.69 +0.4 127,169 + GFF5911 0.88 +0.1 127,169 + GFF5911 0.88 -0.6 127,169 + GFF5911 0.88 +0.7 127,169 + GFF5911 0.88 +0.5 127,170 - GFF5911 0.88 -0.2 127,649 + GFF5912 0.46 +0.3 127,649 + GFF5912 0.46 +1.2 127,650 - GFF5912 0.46 +0.8 127,703 + GFF5912 0.54 +0.1 127,703 + GFF5912 0.54 +0.3 127,704 - GFF5912 0.54 +0.1 127,704 - GFF5912 0.54 -1.0 127,704 - GFF5912 0.54 -0.2 128,046 + +0.2 128,062 + -0.3 128,063 - -0.6 128,110 - -0.9 128,294 - -0.0
Or see this region's nucleotide sequence