Strain Fitness in Variovorax sp. SCN45 around GFF586

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF584 and GFF585 are separated by 73 nucleotidesGFF585 and GFF586 are separated by 105 nucleotidesGFF586 and GFF587 are separated by 32 nucleotidesGFF587 and GFF588 are separated by 85 nucleotides GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014 GFF584 GFF585 - no description, at 633,088 to 633,504 GFF585 GFF586 - Pirin, at 633,610 to 634,533 GFF586 GFF587 - Multimeric flavodoxin WrbA, at 634,566 to 635,117 GFF587 GFF588 - putative membrane protein, at 635,203 to 635,622 GFF588 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 632.610 kb on + strand, within GFF584at 632.610 kb on + strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.658 kb on + strand, within GFF584at 632.658 kb on + strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.905 kb on - strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.090 kb on - strandat 633.090 kb on - strandat 633.233 kb on + strand, within GFF585at 633.233 kb on + strand, within GFF585at 633.234 kb on - strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.299 kb on + strand, within GFF585at 633.299 kb on + strand, within GFF585at 633.300 kb on - strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.465 kb on - strandat 633.489 kb on + strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.505 kb on - strandat 633.505 kb on - strandat 633.505 kb on - strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.630 kb on + strandat 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.996 kb on - strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.567 kb on + strandat 634.568 kb on - strandat 634.688 kb on - strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.879 kb on + strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.123 kb on - strandat 635.133 kb on + strandat 635.133 kb on + strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.204 kb on + strandat 635.205 kb on - strandat 635.205 kb on - strandat 635.211 kb on + strandat 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.408 kb on - strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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632,610 + GFF584 0.74 +0.5
632,610 + GFF584 0.74 +1.3
632,611 - GFF584 0.74 -1.0
632,611 - GFF584 0.74 +0.5
632,611 - GFF584 0.74 +0.8
632,616 + GFF584 0.75 -0.8
632,616 + GFF584 0.75 -0.3
632,616 + GFF584 0.75 +0.2
632,616 + GFF584 0.75 -0.7
632,616 + GFF584 0.75 -0.2
632,616 + GFF584 0.75 -0.4
632,616 + GFF584 0.75 +0.5
632,616 + GFF584 0.75 +0.3
632,617 - GFF584 0.75 -0.4
632,617 - GFF584 0.75 +0.8
632,617 - GFF584 0.75 +0.1
632,617 - GFF584 0.75 +0.8
632,617 - GFF584 0.75 -0.9
632,617 - GFF584 0.75 -0.2
632,617 - GFF584 0.75 +0.4
632,617 - GFF584 0.75 +1.1
632,617 - GFF584 0.75 -0.1
632,617 - GFF584 0.75 -0.9
632,658 + GFF584 0.77 +0.3
632,658 + GFF584 0.77 -0.7
632,659 - GFF584 0.77 +0.1
632,659 - GFF584 0.77 +0.8
632,659 - GFF584 0.77 -0.0
632,905 - +0.6
633,012 + -0.2
633,012 + -0.3
633,012 + -0.5
633,012 + -1.4
633,012 + -0.3
633,012 + -0.1
633,013 - +0.5
633,013 - -1.5
633,013 - -0.2
633,013 - -0.4
633,013 - +0.0
633,013 - -0.7
633,090 - +0.6
633,090 - +0.2
633,233 + GFF585 0.35 +0.1
633,233 + GFF585 0.35 +0.6
633,234 - GFF585 0.35 +0.2
633,248 + GFF585 0.38 -1.0
633,248 + GFF585 0.38 -0.2
633,248 + GFF585 0.38 -0.6
633,248 + GFF585 0.38 +0.1
633,248 + GFF585 0.38 +1.0
633,248 + GFF585 0.38 -0.4
633,249 - GFF585 0.39 -0.0
633,249 - GFF585 0.39 -0.4
633,249 - GFF585 0.39 -0.2
633,249 - GFF585 0.39 +0.2
633,249 - GFF585 0.39 +1.0
633,249 - GFF585 0.39 -0.2
633,249 - GFF585 0.39 -1.4
633,249 - GFF585 0.39 -1.0
633,299 + GFF585 0.51 -0.8
633,299 + GFF585 0.51 -0.1
633,300 - GFF585 0.51 -1.0
633,365 + GFF585 0.66 -0.7
633,365 + GFF585 0.66 -0.1
633,365 + GFF585 0.66 +1.8
633,365 + GFF585 0.66 +0.5
633,365 + GFF585 0.66 +0.2
633,366 - GFF585 0.67 -0.0
633,366 - GFF585 0.67 -0.5
633,366 - GFF585 0.67 +0.8
633,366 - GFF585 0.67 +0.5
633,366 - GFF585 0.67 +2.8
633,366 - GFF585 0.67 -0.0
633,366 - GFF585 0.67 +0.4
633,465 - +0.2
633,489 + -0.4
633,490 - -0.1
633,490 - +0.5
633,490 - -0.2
633,490 - -0.0
633,504 + +4.1
633,504 + -0.0
633,504 + +1.4
633,504 + +0.1
633,504 + -0.2
633,504 + -0.7
633,504 + -1.7
633,504 + +1.2
633,504 + +0.8
633,504 + +0.6
633,505 - +0.2
633,505 - -0.5
633,505 - -1.8
633,576 + -0.3
633,576 + +1.2
633,576 + -0.5
633,576 + +0.5
633,576 + -0.5
633,576 + -1.0
633,576 + -0.8
633,576 + +0.1
633,576 + -0.4
633,576 + +1.1
633,576 + -0.2
633,576 + -0.7
633,576 + -2.0
633,577 - +1.4
633,577 - -0.4
633,577 - +0.5
633,577 - +0.4
633,577 - +1.8
633,577 - -0.4
633,630 + -0.3
633,776 + GFF586 0.18 -0.7
633,776 + GFF586 0.18 -0.9
633,776 + GFF586 0.18 -0.1
633,776 + GFF586 0.18 +1.4
633,776 + GFF586 0.18 +0.6
633,777 - GFF586 0.18 -0.6
633,777 - GFF586 0.18 -0.3
633,777 - GFF586 0.18 +1.2
633,777 - GFF586 0.18 -0.9
633,777 - GFF586 0.18 -0.5
633,926 + GFF586 0.34 -2.1
633,926 + GFF586 0.34 +1.5
633,927 - GFF586 0.34 -0.6
633,927 - GFF586 0.34 +0.0
633,995 + GFF586 0.42 +0.9
633,995 + GFF586 0.42 +0.3
633,995 + GFF586 0.42 -1.0
633,996 - GFF586 0.42 +0.3
634,181 + GFF586 0.62 -0.3
634,181 + GFF586 0.62 +0.4
634,181 + GFF586 0.62 +0.2
634,181 + GFF586 0.62 +1.8
634,182 - GFF586 0.62 +0.1
634,182 - GFF586 0.62 +1.0
634,182 - GFF586 0.62 +0.3
634,182 - GFF586 0.62 +0.1
634,322 + GFF586 0.77 -0.6
634,322 + GFF586 0.77 +1.2
634,322 + GFF586 0.77 +0.5
634,322 + GFF586 0.77 +0.2
634,322 + GFF586 0.77 -0.9
634,322 + GFF586 0.77 -0.5
634,322 + GFF586 0.77 -0.8
634,322 + GFF586 0.77 -0.2
634,323 - GFF586 0.77 -0.1
634,323 - GFF586 0.77 +0.1
634,323 - GFF586 0.77 +0.2
634,323 - GFF586 0.77 -0.1
634,323 - GFF586 0.77 +1.6
634,567 + +0.3
634,568 - -1.1
634,688 - GFF587 0.22 -0.5
634,699 + GFF587 0.24 -0.2
634,699 + GFF587 0.24 +0.4
634,699 + GFF587 0.24 +0.8
634,699 + GFF587 0.24 +0.3
634,699 + GFF587 0.24 -0.8
634,699 + GFF587 0.24 +0.8
634,699 + GFF587 0.24 -1.0
634,699 + GFF587 0.24 +0.3
634,700 - GFF587 0.24 +0.8
634,700 - GFF587 0.24 +1.5
634,700 - GFF587 0.24 -1.0
634,700 - GFF587 0.24 -0.8
634,700 - GFF587 0.24 -0.8
634,700 - GFF587 0.24 +0.2
634,700 - GFF587 0.24 -1.4
634,700 - GFF587 0.24 -0.4
634,700 - GFF587 0.24 +0.9
634,700 - GFF587 0.24 -1.1
634,700 - GFF587 0.24 -0.0
634,795 + GFF587 0.41 -0.8
634,795 + GFF587 0.41 -0.2
634,795 + GFF587 0.41 -1.1
634,795 + GFF587 0.41 -0.5
634,795 + GFF587 0.41 +2.2
634,795 + GFF587 0.41 +0.7
634,795 + GFF587 0.41 -0.3
634,796 - GFF587 0.42 -0.6
634,796 - GFF587 0.42 -0.5
634,796 - GFF587 0.42 +0.3
634,796 - GFF587 0.42 -0.2
634,796 - GFF587 0.42 +0.1
634,879 + GFF587 0.57 -0.8
634,880 - GFF587 0.57 -0.4
634,880 - GFF587 0.57 +1.3
634,939 + GFF587 0.68 -1.1
634,939 + GFF587 0.68 +0.8
634,939 + GFF587 0.68 -0.8
634,939 + GFF587 0.68 -0.1
634,939 + GFF587 0.68 +0.2
634,939 + GFF587 0.68 +0.0
634,939 + GFF587 0.68 -0.0
634,939 + GFF587 0.68 -0.3
634,939 + GFF587 0.68 -0.6
634,939 + GFF587 0.68 -1.5
634,939 + GFF587 0.68 -0.5
634,940 - GFF587 0.68 -0.2
634,940 - GFF587 0.68 -1.4
634,940 - GFF587 0.68 -0.1
634,940 - GFF587 0.68 +0.5
634,940 - GFF587 0.68 -0.2
634,940 - GFF587 0.68 -1.2
634,940 - GFF587 0.68 -2.4
634,940 - GFF587 0.68 -0.2
634,940 - GFF587 0.68 -0.0
634,940 - GFF587 0.68 +0.2
634,940 - GFF587 0.68 -0.2
634,940 - GFF587 0.68 +0.3
634,940 - GFF587 0.68 -1.7
634,953 + GFF587 0.70 +0.2
634,953 + GFF587 0.70 -1.0
634,953 + GFF587 0.70 -0.5
634,954 - GFF587 0.70 +1.2
634,954 - GFF587 0.70 +0.2
634,954 - GFF587 0.70 -0.7
634,954 - GFF587 0.70 -0.3
635,122 + +0.2
635,122 + -0.9
635,122 + +0.4
635,122 + -0.2
635,122 + -0.8
635,123 - +0.4
635,133 + -0.4
635,133 + -0.4
635,134 - +0.8
635,134 - -0.2
635,134 - -0.5
635,204 + -0.1
635,205 - +0.4
635,205 - -0.4
635,211 + -0.7
635,330 + GFF588 0.30 -0.4
635,330 + GFF588 0.30 +0.9
635,330 + GFF588 0.30 +0.2
635,330 + GFF588 0.30 +0.2
635,331 - GFF588 0.30 -0.2
635,331 - GFF588 0.30 +0.6
635,331 - GFF588 0.30 -0.5
635,331 - GFF588 0.30 +0.5
635,331 - GFF588 0.30 -1.5
635,331 - GFF588 0.30 +0.5
635,331 - GFF588 0.30 +0.7
635,331 - GFF588 0.30 +0.0
635,331 - GFF588 0.30 -0.2
635,331 - GFF588 0.30 -0.3
635,407 + GFF588 0.49 +0.3
635,407 + GFF588 0.49 +0.7
635,407 + GFF588 0.49 -0.8
635,408 - GFF588 0.49 -1.0
635,492 + GFF588 0.69 -1.2
635,492 + GFF588 0.69 +0.7
635,493 - GFF588 0.69 +0.8
635,493 - GFF588 0.69 -0.4
635,493 - GFF588 0.69 -0.7

Or see this region's nucleotide sequence