Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF582 and GFF583 are separated by 156 nucleotides GFF583 and GFF584 are separated by 4 nucleotides GFF584 and GFF585 are separated by 73 nucleotides GFF585 and GFF586 are separated by 105 nucleotides
GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754
GFF582
GFF583 - Tripartite tricarboxylate transporter TctB family, at 630,911 to 631,435
GFF583
GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014
GFF584
GFF585 - no description, at 633,088 to 633,504
GFF585
GFF586 - Pirin, at 633,610 to 634,533
GFF586
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.449 kb on + strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.450 kb on - strand, within GFF582 at 630.780 kb on - strand at 630.794 kb on + strand at 630.795 kb on - strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.802 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.810 kb on + strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.811 kb on - strand at 630.816 kb on + strand at 630.816 kb on + strand at 630.878 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.910 kb on + strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.911 kb on - strand at 630.983 kb on + strand, within GFF583 at 630.983 kb on + strand, within GFF583 at 630.984 kb on - strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.025 kb on + strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.026 kb on - strand, within GFF583 at 631.456 kb on + strand at 631.456 kb on + strand at 631.457 kb on - strand at 631.457 kb on - strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.583 kb on + strand at 631.584 kb on - strand at 631.584 kb on - strand at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.602 kb on + strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.603 kb on - strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.650 kb on + strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.651 kb on - strand, within GFF584 at 631.663 kb on - strand, within GFF584 at 632.283 kb on + strand, within GFF584 at 632.284 kb on - strand, within GFF584 at 632.284 kb on - strand, within GFF584 at 632.574 kb on - strand, within GFF584 at 632.610 kb on + strand, within GFF584 at 632.610 kb on + strand, within GFF584 at 632.611 kb on - strand, within GFF584 at 632.611 kb on - strand, within GFF584 at 632.611 kb on - strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.616 kb on + strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.617 kb on - strand, within GFF584 at 632.658 kb on + strand, within GFF584 at 632.658 kb on + strand, within GFF584 at 632.659 kb on - strand, within GFF584 at 632.659 kb on - strand, within GFF584 at 632.659 kb on - strand, within GFF584 at 632.905 kb on - strand at 633.012 kb on + strand at 633.012 kb on + strand at 633.012 kb on + strand at 633.012 kb on + strand at 633.012 kb on + strand at 633.012 kb on + strand at 633.013 kb on - strand at 633.013 kb on - strand at 633.013 kb on - strand at 633.013 kb on - strand at 633.013 kb on - strand at 633.013 kb on - strand at 633.090 kb on - strand at 633.090 kb on - strand at 633.233 kb on + strand, within GFF585 at 633.233 kb on + strand, within GFF585 at 633.234 kb on - strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.248 kb on + strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.249 kb on - strand, within GFF585 at 633.299 kb on + strand, within GFF585 at 633.299 kb on + strand, within GFF585 at 633.300 kb on - strand, within GFF585 at 633.365 kb on + strand, within GFF585 at 633.365 kb on + strand, within GFF585 at 633.365 kb on + strand, within GFF585 at 633.365 kb on + strand, within GFF585 at 633.365 kb on + strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.366 kb on - strand, within GFF585 at 633.465 kb on - strand at 633.489 kb on + strand at 633.490 kb on - strand at 633.490 kb on - strand at 633.490 kb on - strand at 633.490 kb on - strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.504 kb on + strand at 633.505 kb on - strand at 633.505 kb on - strand at 633.505 kb on - strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.576 kb on + strand at 633.577 kb on - strand at 633.577 kb on - strand at 633.577 kb on - strand at 633.577 kb on - strand at 633.577 kb on - strand at 633.577 kb on - strand at 633.630 kb on + strand at 633.776 kb on + strand, within GFF586 at 633.776 kb on + strand, within GFF586 at 633.776 kb on + strand, within GFF586 at 633.776 kb on + strand, within GFF586 at 633.776 kb on + strand, within GFF586 at 633.777 kb on - strand, within GFF586 at 633.777 kb on - strand, within GFF586 at 633.777 kb on - strand, within GFF586 at 633.777 kb on - strand, within GFF586 at 633.777 kb on - strand, within GFF586 at 633.926 kb on + strand, within GFF586 at 633.926 kb on + strand, within GFF586 at 633.927 kb on - strand, within GFF586 at 633.927 kb on - strand, within GFF586 at 633.995 kb on + strand, within GFF586 at 633.995 kb on + strand, within GFF586 at 633.995 kb on + strand, within GFF586 at 633.996 kb on - strand, within GFF586
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 630,449 + GFF582 0.80 +0.1 630,449 + GFF582 0.80 +0.2 630,449 + GFF582 0.80 +0.1 630,449 + GFF582 0.80 +0.5 630,450 - GFF582 0.80 +0.2 630,450 - GFF582 0.80 -0.4 630,450 - GFF582 0.80 +1.0 630,450 - GFF582 0.80 +0.2 630,780 - -0.1 630,794 + +1.1 630,795 - +0.2 630,802 + -0.8 630,802 + +0.3 630,802 + -0.6 630,802 + +1.0 630,810 + +0.0 630,810 + +0.1 630,810 + -1.0 630,810 + -0.1 630,811 - +0.3 630,811 - -0.1 630,811 - +1.5 630,811 - -0.1 630,811 - +0.5 630,811 - -0.8 630,811 - -1.0 630,811 - -1.1 630,811 - -1.9 630,811 - +0.4 630,811 - +0.0 630,811 - -1.1 630,816 + +0.2 630,816 + +0.5 630,878 + +0.2 630,910 + -0.2 630,910 + +0.3 630,910 + +0.6 630,910 + -1.0 630,910 + -0.9 630,910 + +0.1 630,910 + -1.7 630,910 + +1.4 630,910 + +0.8 630,910 + -0.6 630,910 + -0.7 630,910 + -0.6 630,910 + -0.6 630,910 + +0.0 630,910 + +0.8 630,911 - +0.8 630,911 - -0.9 630,911 - -0.2 630,911 - -1.5 630,911 - -0.3 630,911 - -1.0 630,911 - +1.2 630,911 - +0.5 630,911 - -0.3 630,911 - +0.5 630,911 - -1.1 630,911 - -0.2 630,911 - +0.0 630,911 - -0.6 630,911 - +0.7 630,911 - -0.4 630,911 - -1.4 630,983 + GFF583 0.14 -0.5 630,983 + GFF583 0.14 -0.2 630,984 - GFF583 0.14 -0.8 631,025 + GFF583 0.22 -0.1 631,025 + GFF583 0.22 +0.9 631,025 + GFF583 0.22 +0.1 631,025 + GFF583 0.22 +0.7 631,025 + GFF583 0.22 +0.1 631,026 - GFF583 0.22 +0.0 631,026 - GFF583 0.22 +0.0 631,026 - GFF583 0.22 -0.8 631,456 + -0.6 631,456 + -0.1 631,457 - +0.4 631,457 - +0.1 631,583 + -0.4 631,583 + +0.6 631,583 + +0.4 631,584 - -1.3 631,584 - -0.3 631,602 + GFF584 0.10 -0.2 631,602 + GFF584 0.10 -0.5 631,602 + GFF584 0.10 -0.0 631,602 + GFF584 0.10 -0.1 631,602 + GFF584 0.10 -1.3 631,602 + GFF584 0.10 -1.0 631,603 - GFF584 0.10 +0.1 631,603 - GFF584 0.10 -0.3 631,650 + GFF584 0.13 -0.3 631,650 + GFF584 0.13 +0.5 631,651 - GFF584 0.13 +1.0 631,651 - GFF584 0.13 +1.5 631,651 - GFF584 0.13 -2.8 631,663 - GFF584 0.14 +0.1 632,283 + GFF584 0.54 +0.4 632,284 - GFF584 0.54 +0.5 632,284 - GFF584 0.54 -0.5 632,574 - GFF584 0.72 +1.0 632,610 + GFF584 0.74 +0.5 632,610 + GFF584 0.74 +1.3 632,611 - GFF584 0.74 -1.0 632,611 - GFF584 0.74 +0.5 632,611 - GFF584 0.74 +0.8 632,616 + GFF584 0.75 -0.8 632,616 + GFF584 0.75 -0.3 632,616 + GFF584 0.75 +0.2 632,616 + GFF584 0.75 -0.7 632,616 + GFF584 0.75 -0.2 632,616 + GFF584 0.75 -0.4 632,616 + GFF584 0.75 +0.5 632,616 + GFF584 0.75 +0.3 632,617 - GFF584 0.75 -0.4 632,617 - GFF584 0.75 +0.8 632,617 - GFF584 0.75 +0.1 632,617 - GFF584 0.75 +0.8 632,617 - GFF584 0.75 -0.9 632,617 - GFF584 0.75 -0.2 632,617 - GFF584 0.75 +0.4 632,617 - GFF584 0.75 +1.1 632,617 - GFF584 0.75 -0.1 632,617 - GFF584 0.75 -0.9 632,658 + GFF584 0.77 +0.3 632,658 + GFF584 0.77 -0.7 632,659 - GFF584 0.77 +0.1 632,659 - GFF584 0.77 +0.8 632,659 - GFF584 0.77 -0.0 632,905 - +0.6 633,012 + -0.2 633,012 + -0.3 633,012 + -0.5 633,012 + -1.4 633,012 + -0.3 633,012 + -0.1 633,013 - +0.5 633,013 - -1.5 633,013 - -0.2 633,013 - -0.4 633,013 - +0.0 633,013 - -0.7 633,090 - +0.6 633,090 - +0.2 633,233 + GFF585 0.35 +0.1 633,233 + GFF585 0.35 +0.6 633,234 - GFF585 0.35 +0.2 633,248 + GFF585 0.38 -1.0 633,248 + GFF585 0.38 -0.2 633,248 + GFF585 0.38 -0.6 633,248 + GFF585 0.38 +0.1 633,248 + GFF585 0.38 +1.0 633,248 + GFF585 0.38 -0.4 633,249 - GFF585 0.39 -0.0 633,249 - GFF585 0.39 -0.4 633,249 - GFF585 0.39 -0.2 633,249 - GFF585 0.39 +0.2 633,249 - GFF585 0.39 +1.0 633,249 - GFF585 0.39 -0.2 633,249 - GFF585 0.39 -1.4 633,249 - GFF585 0.39 -1.0 633,299 + GFF585 0.51 -0.8 633,299 + GFF585 0.51 -0.1 633,300 - GFF585 0.51 -1.0 633,365 + GFF585 0.66 -0.7 633,365 + GFF585 0.66 -0.1 633,365 + GFF585 0.66 +1.8 633,365 + GFF585 0.66 +0.5 633,365 + GFF585 0.66 +0.2 633,366 - GFF585 0.67 -0.0 633,366 - GFF585 0.67 -0.5 633,366 - GFF585 0.67 +0.8 633,366 - GFF585 0.67 +0.5 633,366 - GFF585 0.67 +2.8 633,366 - GFF585 0.67 -0.0 633,366 - GFF585 0.67 +0.4 633,465 - +0.2 633,489 + -0.4 633,490 - -0.1 633,490 - +0.5 633,490 - -0.2 633,490 - -0.0 633,504 + +4.1 633,504 + -0.0 633,504 + +1.4 633,504 + +0.1 633,504 + -0.2 633,504 + -0.7 633,504 + -1.7 633,504 + +1.2 633,504 + +0.8 633,504 + +0.6 633,505 - +0.2 633,505 - -0.5 633,505 - -1.8 633,576 + -0.3 633,576 + +1.2 633,576 + -0.5 633,576 + +0.5 633,576 + -0.5 633,576 + -1.0 633,576 + -0.8 633,576 + +0.1 633,576 + -0.4 633,576 + +1.1 633,576 + -0.2 633,576 + -0.7 633,576 + -2.0 633,577 - +1.4 633,577 - -0.4 633,577 - +0.5 633,577 - +0.4 633,577 - +1.8 633,577 - -0.4 633,630 + -0.3 633,776 + GFF586 0.18 -0.7 633,776 + GFF586 0.18 -0.9 633,776 + GFF586 0.18 -0.1 633,776 + GFF586 0.18 +1.4 633,776 + GFF586 0.18 +0.6 633,777 - GFF586 0.18 -0.6 633,777 - GFF586 0.18 -0.3 633,777 - GFF586 0.18 +1.2 633,777 - GFF586 0.18 -0.9 633,777 - GFF586 0.18 -0.5 633,926 + GFF586 0.34 -2.1 633,926 + GFF586 0.34 +1.5 633,927 - GFF586 0.34 -0.6 633,927 - GFF586 0.34 +0.0 633,995 + GFF586 0.42 +0.9 633,995 + GFF586 0.42 +0.3 633,995 + GFF586 0.42 -1.0 633,996 - GFF586 0.42 +0.3
Or see this region's nucleotide sequence