Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5811 and GFF5812 are separated by 18 nucleotides GFF5812 and GFF5813 overlap by 4 nucleotides
GFF5811 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like, at 187,702 to 190,872
GFF5811
GFF5812 - DNA-binding heavy metal response regulator, at 190,891 to 191,631
GFF5812
GFF5813 - Heavy metal sensor histidine kinase, at 191,628 to 193,025
GFF5813
Position (kb) 190
191
192 Strain fitness (log2 ratio) -1
0
1 at 189.979 kb on + strand, within GFF5811 at 189.980 kb on - strand, within GFF5811 at 190.043 kb on - strand, within GFF5811 at 190.117 kb on + strand, within GFF5811 at 190.118 kb on - strand, within GFF5811 at 190.309 kb on + strand, within GFF5811 at 190.309 kb on + strand, within GFF5811 at 190.340 kb on - strand, within GFF5811 at 190.369 kb on + strand, within GFF5811 at 190.370 kb on - strand, within GFF5811 at 190.431 kb on - strand, within GFF5811 at 190.580 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.768 kb on + strand at 190.768 kb on + strand at 190.769 kb on - strand at 190.769 kb on - strand at 190.792 kb on + strand at 190.966 kb on + strand, within GFF5812 at 191.573 kb on - strand at 191.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 189,979 + GFF5811 0.72 +1.6 189,980 - GFF5811 0.72 +0.1 190,043 - GFF5811 0.74 +0.6 190,117 + GFF5811 0.76 -0.2 190,118 - GFF5811 0.76 +0.5 190,309 + GFF5811 0.82 +0.8 190,309 + GFF5811 0.82 -0.3 190,340 - GFF5811 0.83 +0.9 190,369 + GFF5811 0.84 -0.7 190,370 - GFF5811 0.84 +0.5 190,431 - GFF5811 0.86 +0.9 190,580 - -0.2 190,763 - -1.6 190,763 - -0.0 190,763 - -1.0 190,763 - +0.1 190,768 + +1.2 190,768 + +0.2 190,769 - -0.3 190,769 - +0.1 190,792 + +0.1 190,966 + GFF5812 0.10 +0.3 191,573 - -0.6 191,748 + -0.8
Or see this region's nucleotide sequence