Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5773 and GFF5774 are separated by 34 nucleotides GFF5774 and GFF5775 are separated by 77 nucleotides GFF5775 and GFF5776 overlap by 41 nucleotides GFF5776 and GFF5777 are separated by 4 nucleotides
GFF5773 - Flagellar synthesis regulator FleN, at 147,711 to 148,544
GFF5773
GFF5774 - RNA polymerase sigma factor for flagellar operon, at 148,579 to 149,313
GFF5774
GFF5775 - Glucoamylase (EC 3.2.1.3), at 149,391 to 151,298
GFF5775
GFF5776 - Gluconokinase (EC 2.7.1.12), at 151,258 to 151,803
GFF5776
GFF5777 - 5-keto-D-gluconate 5-reductase (EC 1.1.1.69), at 151,808 to 152,569
GFF5777
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -1
0
1
2 at 148.744 kb on + strand, within GFF5774 at 149.002 kb on + strand, within GFF5774 at 149.188 kb on + strand, within GFF5774 at 149.189 kb on - strand, within GFF5774 at 149.191 kb on + strand, within GFF5774 at 149.191 kb on + strand, within GFF5774 at 149.192 kb on - strand, within GFF5774 at 149.319 kb on + strand at 149.646 kb on + strand, within GFF5775 at 149.647 kb on - strand, within GFF5775 at 149.647 kb on - strand, within GFF5775 at 149.647 kb on - strand, within GFF5775 at 150.147 kb on + strand, within GFF5775 at 150.147 kb on + strand, within GFF5775 at 150.147 kb on + strand, within GFF5775 at 150.147 kb on + strand, within GFF5775 at 150.147 kb on + strand, within GFF5775 at 150.226 kb on - strand, within GFF5775 at 150.265 kb on - strand, within GFF5775 at 150.286 kb on - strand, within GFF5775 at 150.286 kb on - strand, within GFF5775 at 150.363 kb on + strand, within GFF5775 at 150.363 kb on + strand, within GFF5775 at 150.363 kb on + strand, within GFF5775 at 150.364 kb on - strand, within GFF5775 at 150.364 kb on - strand, within GFF5775 at 150.364 kb on - strand, within GFF5775 at 150.420 kb on + strand, within GFF5775 at 150.421 kb on - strand, within GFF5775 at 150.483 kb on + strand, within GFF5775 at 150.780 kb on + strand, within GFF5775 at 150.780 kb on + strand, within GFF5775 at 150.810 kb on + strand, within GFF5775 at 150.813 kb on + strand, within GFF5775 at 150.813 kb on + strand, within GFF5775 at 150.814 kb on - strand, within GFF5775 at 150.928 kb on - strand, within GFF5775 at 150.942 kb on + strand, within GFF5775 at 150.942 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.029 kb on + strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.030 kb on - strand, within GFF5775 at 151.119 kb on + strand at 151.120 kb on - strand at 151.120 kb on - strand at 151.120 kb on - strand at 151.357 kb on + strand, within GFF5776 at 151.357 kb on + strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.358 kb on - strand, within GFF5776 at 151.408 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.427 kb on + strand, within GFF5776 at 151.428 kb on - strand, within GFF5776 at 151.428 kb on - strand, within GFF5776 at 151.809 kb on + strand at 151.810 kb on - strand at 151.810 kb on - strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.839 kb on + strand at 151.840 kb on - strand at 151.840 kb on - strand at 151.840 kb on - strand at 151.846 kb on + strand at 152.004 kb on + strand, within GFF5777 at 152.005 kb on - strand, within GFF5777 at 152.005 kb on - strand, within GFF5777 at 152.037 kb on + strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.038 kb on - strand, within GFF5777 at 152.101 kb on - strand, within GFF5777 at 152.101 kb on - strand, within GFF5777
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,744 + GFF5774 0.22 -0.9 149,002 + GFF5774 0.58 +0.3 149,188 + GFF5774 0.83 +1.2 149,189 - GFF5774 0.83 -0.7 149,191 + GFF5774 0.83 -0.7 149,191 + GFF5774 0.83 -0.1 149,192 - GFF5774 0.83 -1.7 149,319 + -1.0 149,646 + GFF5775 0.13 -0.8 149,647 - GFF5775 0.13 +0.2 149,647 - GFF5775 0.13 +0.5 149,647 - GFF5775 0.13 +0.3 150,147 + GFF5775 0.40 +0.8 150,147 + GFF5775 0.40 -1.3 150,147 + GFF5775 0.40 +1.4 150,147 + GFF5775 0.40 -1.4 150,147 + GFF5775 0.40 -1.7 150,226 - GFF5775 0.44 +0.2 150,265 - GFF5775 0.46 -0.2 150,286 - GFF5775 0.47 -1.5 150,286 - GFF5775 0.47 -0.2 150,363 + GFF5775 0.51 -0.3 150,363 + GFF5775 0.51 +0.5 150,363 + GFF5775 0.51 +0.3 150,364 - GFF5775 0.51 -0.3 150,364 - GFF5775 0.51 +0.2 150,364 - GFF5775 0.51 +0.1 150,420 + GFF5775 0.54 +0.3 150,421 - GFF5775 0.54 +0.1 150,483 + GFF5775 0.57 +0.3 150,780 + GFF5775 0.73 +0.2 150,780 + GFF5775 0.73 -0.4 150,810 + GFF5775 0.74 -0.5 150,813 + GFF5775 0.75 +1.8 150,813 + GFF5775 0.75 +0.3 150,814 - GFF5775 0.75 -0.5 150,928 - GFF5775 0.81 -0.5 150,942 + GFF5775 0.81 +1.2 150,942 + GFF5775 0.81 +0.2 151,029 + GFF5775 0.86 +0.5 151,029 + GFF5775 0.86 +0.0 151,029 + GFF5775 0.86 -0.4 151,029 + GFF5775 0.86 +0.7 151,029 + GFF5775 0.86 -0.5 151,029 + GFF5775 0.86 +2.0 151,030 - GFF5775 0.86 -0.3 151,030 - GFF5775 0.86 +0.6 151,030 - GFF5775 0.86 +0.6 151,119 + -0.3 151,120 - -0.5 151,120 - -0.1 151,120 - -0.5 151,357 + GFF5776 0.18 +2.1 151,357 + GFF5776 0.18 -1.1 151,358 - GFF5776 0.18 +0.2 151,358 - GFF5776 0.18 -0.4 151,358 - GFF5776 0.18 +0.2 151,408 + GFF5776 0.27 +0.9 151,427 + GFF5776 0.31 +0.6 151,427 + GFF5776 0.31 -1.3 151,427 + GFF5776 0.31 -0.2 151,427 + GFF5776 0.31 -0.6 151,427 + GFF5776 0.31 +0.1 151,428 - GFF5776 0.31 +0.2 151,428 - GFF5776 0.31 -0.3 151,809 + +0.3 151,810 - -0.1 151,810 - +0.4 151,839 + +1.5 151,839 + +0.8 151,839 + -1.0 151,839 + +0.4 151,840 - +0.1 151,840 - -0.4 151,840 - -1.2 151,846 + -0.9 152,004 + GFF5777 0.26 +0.2 152,005 - GFF5777 0.26 -0.3 152,005 - GFF5777 0.26 +0.5 152,037 + GFF5777 0.30 +0.0 152,038 - GFF5777 0.30 +0.5 152,038 - GFF5777 0.30 -0.2 152,038 - GFF5777 0.30 +0.6 152,038 - GFF5777 0.30 -0.5 152,101 - GFF5777 0.38 -0.3 152,101 - GFF5777 0.38 +0.5
Or see this region's nucleotide sequence