Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5745 and GFF5746 are separated by 16 nucleotides GFF5746 and GFF5747 overlap by 4 nucleotides GFF5747 and GFF5748 are separated by 5 nucleotides GFF5748 and GFF5749 overlap by 14 nucleotides
GFF5745 - Flagellar hook-length control protein FliK, at 117,444 to 118,883
GFF5745
GFF5746 - Flagellar protein FliJ, at 118,900 to 119,355
GFF5746
GFF5747 - Flagellum-specific ATP synthase FliI, at 119,352 to 120,821
GFF5747
GFF5748 - Flagellar assembly protein FliH, at 120,827 to 121,645
GFF5748
GFF5749 - Flagellar motor switch protein FliG, at 121,632 to 122,630
GFF5749
Position (kb) 119
120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 119.210 kb on + strand, within GFF5746 at 119.211 kb on - strand, within GFF5746 at 119.222 kb on + strand, within GFF5746 at 119.506 kb on + strand, within GFF5747 at 119.506 kb on + strand, within GFF5747 at 119.692 kb on + strand, within GFF5747 at 119.803 kb on + strand, within GFF5747 at 119.803 kb on + strand, within GFF5747 at 119.804 kb on - strand, within GFF5747 at 120.017 kb on - strand, within GFF5747 at 120.038 kb on - strand, within GFF5747 at 120.613 kb on + strand, within GFF5747 at 120.613 kb on + strand, within GFF5747
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 119,210 + GFF5746 0.68 -2.5 119,211 - GFF5746 0.68 -1.1 119,222 + GFF5746 0.71 +0.2 119,506 + GFF5747 0.10 +0.1 119,506 + GFF5747 0.10 -0.2 119,692 + GFF5747 0.23 -0.9 119,803 + GFF5747 0.31 -1.4 119,803 + GFF5747 0.31 -0.7 119,804 - GFF5747 0.31 -1.2 120,017 - GFF5747 0.45 -0.2 120,038 - GFF5747 0.47 -0.5 120,613 + GFF5747 0.86 -0.7 120,613 + GFF5747 0.86 -0.1
Or see this region's nucleotide sequence