Strain Fitness in Variovorax sp. SCN45 around GFF5698

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5697 and GFF5698 are separated by 88 nucleotidesGFF5698 and GFF5699 are separated by 60 nucleotidesGFF5699 and GFF5700 overlap by 1 nucleotides GFF5697 - Ferredoxin reductase, at 70,576 to 71,805 GFF5697 GFF5698 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) / 3'-nucleotidase (EC 3.1.3.6), at 71,894 to 73,996 GFF5698 GFF5699 - Smr domain protein, at 74,057 to 74,713 GFF5699 GFF5700 - UPF0758 family protein, at 74,713 to 75,390 GFF5700 Position (kb) 71 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 71.804 kb on - strandat 71.804 kb on - strandat 71.804 kb on - strandat 72.125 kb on + strand, within GFF5698at 72.125 kb on + strand, within GFF5698at 72.152 kb on + strand, within GFF5698at 72.152 kb on + strand, within GFF5698at 72.153 kb on - strand, within GFF5698at 72.153 kb on - strand, within GFF5698at 72.158 kb on + strand, within GFF5698at 72.158 kb on + strand, within GFF5698at 72.260 kb on + strand, within GFF5698at 72.260 kb on + strand, within GFF5698at 72.261 kb on - strand, within GFF5698at 72.261 kb on - strand, within GFF5698at 72.261 kb on - strand, within GFF5698at 72.261 kb on - strand, within GFF5698at 72.261 kb on - strand, within GFF5698at 72.308 kb on + strand, within GFF5698at 72.309 kb on - strand, within GFF5698at 72.369 kb on - strand, within GFF5698at 72.369 kb on - strand, within GFF5698at 72.369 kb on - strand, within GFF5698at 72.516 kb on - strand, within GFF5698at 72.516 kb on - strand, within GFF5698at 72.639 kb on + strand, within GFF5698at 72.640 kb on - strand, within GFF5698at 72.640 kb on - strand, within GFF5698at 72.686 kb on + strand, within GFF5698at 72.686 kb on + strand, within GFF5698at 72.687 kb on - strand, within GFF5698at 72.791 kb on + strand, within GFF5698at 72.791 kb on + strand, within GFF5698at 72.792 kb on - strand, within GFF5698at 72.792 kb on - strand, within GFF5698at 72.792 kb on - strand, within GFF5698at 72.875 kb on + strand, within GFF5698at 72.983 kb on + strand, within GFF5698at 72.983 kb on + strand, within GFF5698at 73.136 kb on + strand, within GFF5698at 73.136 kb on + strand, within GFF5698at 73.136 kb on + strand, within GFF5698at 73.136 kb on + strand, within GFF5698at 73.136 kb on + strand, within GFF5698at 73.137 kb on - strand, within GFF5698at 73.137 kb on - strand, within GFF5698at 73.137 kb on - strand, within GFF5698at 73.137 kb on - strand, within GFF5698at 73.181 kb on + strand, within GFF5698at 73.181 kb on + strand, within GFF5698at 73.181 kb on + strand, within GFF5698at 73.182 kb on - strand, within GFF5698at 73.182 kb on - strand, within GFF5698at 73.182 kb on - strand, within GFF5698at 73.241 kb on + strand, within GFF5698at 73.242 kb on - strand, within GFF5698at 73.242 kb on - strand, within GFF5698at 73.242 kb on - strand, within GFF5698at 73.242 kb on - strand, within GFF5698at 73.253 kb on + strand, within GFF5698at 73.254 kb on - strand, within GFF5698at 73.254 kb on - strand, within GFF5698at 73.254 kb on - strand, within GFF5698at 73.277 kb on + strand, within GFF5698at 73.326 kb on - strand, within GFF5698at 73.343 kb on + strand, within GFF5698at 73.343 kb on + strand, within GFF5698at 73.394 kb on + strand, within GFF5698at 73.394 kb on + strand, within GFF5698at 73.395 kb on - strand, within GFF5698at 73.395 kb on - strand, within GFF5698at 73.395 kb on - strand, within GFF5698at 73.395 kb on - strand, within GFF5698at 73.415 kb on + strand, within GFF5698at 73.415 kb on + strand, within GFF5698at 73.535 kb on + strand, within GFF5698at 73.536 kb on - strand, within GFF5698at 73.571 kb on + strand, within GFF5698at 73.571 kb on + strand, within GFF5698at 73.571 kb on + strand, within GFF5698at 73.571 kb on + strand, within GFF5698at 73.622 kb on + strand, within GFF5698at 73.622 kb on + strand, within GFF5698at 73.622 kb on + strand, within GFF5698at 73.623 kb on - strand, within GFF5698at 73.652 kb on + strand, within GFF5698at 73.676 kb on + strand, within GFF5698at 73.677 kb on - strand, within GFF5698at 73.734 kb on - strand, within GFF5698at 73.734 kb on - strand, within GFF5698at 73.773 kb on - strand, within GFF5698at 73.773 kb on - strand, within GFF5698at 73.773 kb on - strand, within GFF5698at 73.967 kb on + strandat 73.968 kb on - strandat 73.968 kb on - strandat 73.994 kb on + strandat 73.994 kb on + strandat 74.250 kb on + strand, within GFF5699at 74.250 kb on + strand, within GFF5699at 74.251 kb on - strand, within GFF5699at 74.327 kb on + strand, within GFF5699at 74.327 kb on + strand, within GFF5699at 74.327 kb on + strand, within GFF5699at 74.328 kb on - strand, within GFF5699at 74.328 kb on - strand, within GFF5699at 74.930 kb on + strand, within GFF5700

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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71,804 - +0.3
71,804 - -0.1
71,804 - +0.8
72,125 + GFF5698 0.11 -0.0
72,125 + GFF5698 0.11 -0.5
72,152 + GFF5698 0.12 -1.6
72,152 + GFF5698 0.12 -1.1
72,153 - GFF5698 0.12 -0.8
72,153 - GFF5698 0.12 -0.2
72,158 + GFF5698 0.13 +0.2
72,158 + GFF5698 0.13 -0.4
72,260 + GFF5698 0.17 -0.4
72,260 + GFF5698 0.17 -1.0
72,261 - GFF5698 0.17 +0.2
72,261 - GFF5698 0.17 +1.5
72,261 - GFF5698 0.17 -0.4
72,261 - GFF5698 0.17 +0.1
72,261 - GFF5698 0.17 +0.1
72,308 + GFF5698 0.20 +0.4
72,309 - GFF5698 0.20 -0.8
72,369 - GFF5698 0.23 +0.4
72,369 - GFF5698 0.23 -0.1
72,369 - GFF5698 0.23 +0.8
72,516 - GFF5698 0.30 +1.8
72,516 - GFF5698 0.30 +0.8
72,639 + GFF5698 0.35 +0.2
72,640 - GFF5698 0.35 -0.0
72,640 - GFF5698 0.35 +0.2
72,686 + GFF5698 0.38 -1.4
72,686 + GFF5698 0.38 +0.0
72,687 - GFF5698 0.38 -0.1
72,791 + GFF5698 0.43 -1.6
72,791 + GFF5698 0.43 -1.0
72,792 - GFF5698 0.43 -0.2
72,792 - GFF5698 0.43 -0.4
72,792 - GFF5698 0.43 -0.9
72,875 + GFF5698 0.47 -0.2
72,983 + GFF5698 0.52 +0.5
72,983 + GFF5698 0.52 -0.6
73,136 + GFF5698 0.59 -0.5
73,136 + GFF5698 0.59 -0.8
73,136 + GFF5698 0.59 -0.7
73,136 + GFF5698 0.59 +0.2
73,136 + GFF5698 0.59 +0.7
73,137 - GFF5698 0.59 -1.5
73,137 - GFF5698 0.59 +1.3
73,137 - GFF5698 0.59 -0.5
73,137 - GFF5698 0.59 -0.7
73,181 + GFF5698 0.61 +0.2
73,181 + GFF5698 0.61 -0.6
73,181 + GFF5698 0.61 +0.1
73,182 - GFF5698 0.61 -0.9
73,182 - GFF5698 0.61 -1.0
73,182 - GFF5698 0.61 +0.7
73,241 + GFF5698 0.64 -0.8
73,242 - GFF5698 0.64 +1.1
73,242 - GFF5698 0.64 +0.8
73,242 - GFF5698 0.64 -0.5
73,242 - GFF5698 0.64 -1.4
73,253 + GFF5698 0.65 +0.5
73,254 - GFF5698 0.65 -0.4
73,254 - GFF5698 0.65 -1.1
73,254 - GFF5698 0.65 +0.4
73,277 + GFF5698 0.66 -0.6
73,326 - GFF5698 0.68 -0.4
73,343 + GFF5698 0.69 -0.1
73,343 + GFF5698 0.69 -0.9
73,394 + GFF5698 0.71 -0.5
73,394 + GFF5698 0.71 +0.3
73,395 - GFF5698 0.71 -2.0
73,395 - GFF5698 0.71 +0.1
73,395 - GFF5698 0.71 -0.3
73,395 - GFF5698 0.71 -0.2
73,415 + GFF5698 0.72 -2.7
73,415 + GFF5698 0.72 -0.2
73,535 + GFF5698 0.78 -1.2
73,536 - GFF5698 0.78 +0.5
73,571 + GFF5698 0.80 +0.7
73,571 + GFF5698 0.80 +1.0
73,571 + GFF5698 0.80 -0.6
73,571 + GFF5698 0.80 +3.8
73,622 + GFF5698 0.82 +0.5
73,622 + GFF5698 0.82 -0.2
73,622 + GFF5698 0.82 +0.3
73,623 - GFF5698 0.82 -0.8
73,652 + GFF5698 0.84 -2.1
73,676 + GFF5698 0.85 -0.3
73,677 - GFF5698 0.85 +0.8
73,734 - GFF5698 0.87 -1.2
73,734 - GFF5698 0.87 +0.2
73,773 - GFF5698 0.89 -0.3
73,773 - GFF5698 0.89 -0.3
73,773 - GFF5698 0.89 +1.2
73,967 + +1.0
73,968 - -0.5
73,968 - -0.2
73,994 + +0.3
73,994 + -0.2
74,250 + GFF5699 0.29 +0.0
74,250 + GFF5699 0.29 +1.8
74,251 - GFF5699 0.30 +1.0
74,327 + GFF5699 0.41 -0.3
74,327 + GFF5699 0.41 +0.8
74,327 + GFF5699 0.41 +0.6
74,328 - GFF5699 0.41 -0.1
74,328 - GFF5699 0.41 -0.5
74,930 + GFF5700 0.32 +0.1

Or see this region's nucleotide sequence