Strain Fitness in Variovorax sp. SCN45 around GFF5655

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5654 and GFF5655 overlap by 1 nucleotidesGFF5655 and GFF5656 are separated by 10 nucleotidesGFF5656 and GFF5657 are separated by 13 nucleotides GFF5654 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 30,105 to 31,553 GFF5654 GFF5655 - Formate dehydrogenase formation protein FdhE, at 31,553 to 32,581 GFF5655 GFF5656 - Formate dehydrogenase O gamma subunit (EC 1.2.1.2), at 32,592 to 33,215 GFF5656 GFF5657 - Formate dehydrogenase O beta subunit (EC 1.2.1.2), at 33,229 to 34,191 GFF5657 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 30.718 kb on + strand, within GFF5654at 30.718 kb on + strand, within GFF5654at 30.718 kb on + strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.719 kb on - strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.838 kb on + strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.839 kb on - strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.895 kb on + strand, within GFF5654at 30.896 kb on - strand, within GFF5654at 30.896 kb on - strand, within GFF5654at 31.641 kb on - strandat 31.688 kb on + strand, within GFF5655at 31.688 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.869 kb on + strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 31.870 kb on - strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.001 kb on + strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.002 kb on - strand, within GFF5655at 32.052 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.294 kb on + strand, within GFF5655at 32.295 kb on - strand, within GFF5655at 32.295 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.347 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.401 kb on - strand, within GFF5655at 32.590 kb on + strandat 32.590 kb on + strandat 32.591 kb on - strandat 32.591 kb on - strandat 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.707 kb on + strand, within GFF5656at 32.708 kb on - strand, within GFF5656at 32.708 kb on - strand, within GFF5656at 32.708 kb on - strand, within GFF5656at 32.784 kb on + strand, within GFF5656at 32.893 kb on + strand, within GFF5656at 32.894 kb on - strand, within GFF5656at 32.894 kb on - strand, within GFF5656at 32.894 kb on - strand, within GFF5656at 32.894 kb on - strand, within GFF5656at 33.202 kb on + strandat 33.202 kb on + strandat 33.202 kb on + strandat 33.202 kb on + strandat 33.203 kb on - strandat 33.205 kb on + strandat 33.205 kb on + strandat 33.205 kb on + strandat 33.206 kb on - strandat 33.206 kb on - strandat 33.206 kb on - strandat 33.340 kb on + strand, within GFF5657at 33.359 kb on + strand, within GFF5657at 33.359 kb on + strand, within GFF5657at 33.360 kb on - strand, within GFF5657at 33.360 kb on - strand, within GFF5657at 33.476 kb on + strand, within GFF5657at 33.476 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.509 kb on + strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.510 kb on - strand, within GFF5657at 33.545 kb on + strand, within GFF5657at 33.546 kb on - strand, within GFF5657at 33.546 kb on - strand, within GFF5657at 33.546 kb on - strand, within GFF5657at 33.546 kb on - strand, within GFF5657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
30,718 + GFF5654 0.42 -0.9
30,718 + GFF5654 0.42 -1.3
30,718 + GFF5654 0.42 -0.2
30,719 - GFF5654 0.42 -0.2
30,719 - GFF5654 0.42 -1.1
30,719 - GFF5654 0.42 -0.3
30,838 + GFF5654 0.51 -0.7
30,838 + GFF5654 0.51 -0.6
30,838 + GFF5654 0.51 +0.6
30,839 - GFF5654 0.51 -1.4
30,839 - GFF5654 0.51 +0.0
30,839 - GFF5654 0.51 -0.8
30,839 - GFF5654 0.51 -0.6
30,895 + GFF5654 0.55 -0.0
30,895 + GFF5654 0.55 +0.3
30,895 + GFF5654 0.55 -0.5
30,895 + GFF5654 0.55 +0.3
30,895 + GFF5654 0.55 -0.3
30,896 - GFF5654 0.55 +0.0
30,896 - GFF5654 0.55 +4.0
31,641 - +3.8
31,688 + GFF5655 0.13 -1.3
31,688 + GFF5655 0.13 -0.1
31,869 + GFF5655 0.31 -0.8
31,869 + GFF5655 0.31 -0.2
31,869 + GFF5655 0.31 -0.7
31,869 + GFF5655 0.31 -0.1
31,869 + GFF5655 0.31 -0.4
31,870 - GFF5655 0.31 -0.4
31,870 - GFF5655 0.31 -0.0
31,870 - GFF5655 0.31 -1.0
31,870 - GFF5655 0.31 -0.4
31,870 - GFF5655 0.31 +0.3
31,870 - GFF5655 0.31 -0.4
32,001 + GFF5655 0.44 -0.9
32,001 + GFF5655 0.44 -0.4
32,001 + GFF5655 0.44 -1.9
32,002 - GFF5655 0.44 -0.5
32,002 - GFF5655 0.44 -0.5
32,002 - GFF5655 0.44 +0.6
32,002 - GFF5655 0.44 -1.0
32,002 - GFF5655 0.44 -0.4
32,052 + GFF5655 0.48 -1.2
32,294 + GFF5655 0.72 -0.4
32,294 + GFF5655 0.72 -0.1
32,294 + GFF5655 0.72 -0.3
32,295 - GFF5655 0.72 +0.3
32,295 - GFF5655 0.72 +1.8
32,347 - GFF5655 0.77 -0.0
32,347 - GFF5655 0.77 -0.1
32,347 - GFF5655 0.77 -0.3
32,401 - GFF5655 0.82 +1.0
32,401 - GFF5655 0.82 +0.0
32,401 - GFF5655 0.82 +0.0
32,401 - GFF5655 0.82 +0.3
32,590 + -0.5
32,590 + -0.6
32,591 - -0.7
32,591 - -0.1
32,707 + GFF5656 0.18 +0.4
32,707 + GFF5656 0.18 +0.2
32,707 + GFF5656 0.18 -0.6
32,707 + GFF5656 0.18 +0.1
32,707 + GFF5656 0.18 +0.6
32,707 + GFF5656 0.18 -0.4
32,707 + GFF5656 0.18 +0.3
32,707 + GFF5656 0.18 -1.1
32,707 + GFF5656 0.18 +0.5
32,708 - GFF5656 0.19 -1.5
32,708 - GFF5656 0.19 +0.4
32,708 - GFF5656 0.19 +0.7
32,784 + GFF5656 0.31 +1.0
32,893 + GFF5656 0.48 -0.8
32,894 - GFF5656 0.48 -0.2
32,894 - GFF5656 0.48 +0.0
32,894 - GFF5656 0.48 -1.1
32,894 - GFF5656 0.48 -0.1
33,202 + +0.2
33,202 + -0.5
33,202 + -2.0
33,202 + -0.7
33,203 - -2.5
33,205 + -0.4
33,205 + -0.1
33,205 + -0.9
33,206 - -0.4
33,206 - +0.8
33,206 - -0.1
33,340 + GFF5657 0.12 +0.3
33,359 + GFF5657 0.13 +1.0
33,359 + GFF5657 0.13 -0.6
33,360 - GFF5657 0.14 -0.4
33,360 - GFF5657 0.14 -0.8
33,476 + GFF5657 0.26 -0.6
33,476 + GFF5657 0.26 +2.2
33,509 + GFF5657 0.29 -0.8
33,509 + GFF5657 0.29 -0.8
33,509 + GFF5657 0.29 -1.0
33,509 + GFF5657 0.29 -0.0
33,509 + GFF5657 0.29 -1.1
33,509 + GFF5657 0.29 -0.8
33,509 + GFF5657 0.29 -0.4
33,509 + GFF5657 0.29 +0.4
33,509 + GFF5657 0.29 -0.4
33,509 + GFF5657 0.29 -0.1
33,510 - GFF5657 0.29 +0.1
33,510 - GFF5657 0.29 -0.8
33,510 - GFF5657 0.29 +0.1
33,510 - GFF5657 0.29 -0.3
33,510 - GFF5657 0.29 -1.3
33,510 - GFF5657 0.29 -1.0
33,545 + GFF5657 0.33 +0.4
33,546 - GFF5657 0.33 -1.5
33,546 - GFF5657 0.33 +0.8
33,546 - GFF5657 0.33 -0.0
33,546 - GFF5657 0.33 -0.1

Or see this region's nucleotide sequence