Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5619 and GFF5620 are separated by 63 nucleotides GFF5620 and GFF5621 are separated by 5 nucleotides
GFF5619 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,153 to 243,484
GFF5619
GFF5620 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 243,548 to 244,612
GFF5620
GFF5621 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 244,618 to 245,547
GFF5621
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1
2
3 at 242.644 kb on - strand, within GFF5619 at 242.644 kb on - strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.706 kb on + strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.707 kb on - strand, within GFF5619 at 242.940 kb on + strand, within GFF5619 at 242.941 kb on - strand, within GFF5619 at 243.031 kb on - strand, within GFF5619 at 243.309 kb on + strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.310 kb on - strand, within GFF5619 at 243.366 kb on + strand at 243.366 kb on + strand at 243.933 kb on + strand, within GFF5620 at 243.933 kb on + strand, within GFF5620 at 243.934 kb on - strand, within GFF5620 at 244.068 kb on + strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.069 kb on - strand, within GFF5620 at 244.218 kb on + strand, within GFF5620 at 244.219 kb on - strand, within GFF5620 at 244.338 kb on + strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.339 kb on - strand, within GFF5620 at 244.398 kb on + strand, within GFF5620 at 244.473 kb on + strand, within GFF5620 at 244.576 kb on - strand at 244.576 kb on - strand at 244.606 kb on - strand at 244.606 kb on - strand at 244.692 kb on - strand at 244.692 kb on - strand at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.165 kb on + strand, within GFF5621 at 245.211 kb on - strand, within GFF5621 at 245.462 kb on + strand at 245.463 kb on - strand at 245.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 242,644 - GFF5619 0.37 +0.3 242,644 - GFF5619 0.37 +1.8 242,706 + GFF5619 0.42 -0.7 242,706 + GFF5619 0.42 +0.0 242,706 + GFF5619 0.42 +0.7 242,707 - GFF5619 0.42 -0.6 242,707 - GFF5619 0.42 +1.1 242,940 + GFF5619 0.59 -0.2 242,941 - GFF5619 0.59 -0.4 243,031 - GFF5619 0.66 -0.7 243,309 + GFF5619 0.87 -0.3 243,310 - GFF5619 0.87 -0.7 243,310 - GFF5619 0.87 -0.3 243,366 + -1.4 243,366 + +3.3 243,933 + GFF5620 0.36 -0.3 243,933 + GFF5620 0.36 +0.0 243,934 - GFF5620 0.36 +0.9 244,068 + GFF5620 0.49 +0.3 244,069 - GFF5620 0.49 +0.1 244,069 - GFF5620 0.49 -0.2 244,218 + GFF5620 0.63 -0.1 244,219 - GFF5620 0.63 +1.5 244,338 + GFF5620 0.74 +0.1 244,339 - GFF5620 0.74 -0.1 244,339 - GFF5620 0.74 +0.6 244,398 + GFF5620 0.80 -0.1 244,473 + GFF5620 0.87 -0.1 244,576 - -0.9 244,576 - -0.7 244,606 - +1.1 244,606 - -0.3 244,692 - +0.6 244,692 - +0.2 245,165 + GFF5621 0.59 -0.1 245,165 + GFF5621 0.59 -0.4 245,165 + GFF5621 0.59 +1.3 245,165 + GFF5621 0.59 -0.2 245,165 + GFF5621 0.59 -0.8 245,165 + GFF5621 0.59 -1.1 245,211 - GFF5621 0.64 +0.2 245,462 + +0.2 245,463 - -0.9 245,495 + -0.3
Or see this region's nucleotide sequence