Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5614 and GFF5615 are separated by 45 nucleotides GFF5615 and GFF5616 are separated by 90 nucleotides
GFF5614 - hypothetical protein, at 236,345 to 237,574
GFF5614
GFF5615 - Citrate synthase (si) (EC 2.3.3.1), at 237,620 to 238,759
GFF5615
GFF5616 - hypothetical protein, at 238,850 to 239,887
GFF5616
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 237.431 kb on - strand, within GFF5614 at 237.431 kb on - strand, within GFF5614 at 237.548 kb on + strand at 237.548 kb on + strand at 237.548 kb on + strand at 237.569 kb on - strand at 238.005 kb on - strand, within GFF5615 at 238.142 kb on + strand, within GFF5615 at 238.395 kb on - strand, within GFF5615 at 238.568 kb on + strand, within GFF5615 at 238.569 kb on - strand, within GFF5615 at 238.709 kb on + strand at 238.710 kb on - strand at 238.710 kb on - strand at 238.763 kb on + strand at 238.763 kb on + strand at 238.764 kb on - strand at 238.764 kb on - strand at 238.841 kb on + strand at 238.842 kb on - strand at 238.842 kb on - strand at 238.842 kb on - strand at 239.012 kb on + strand, within GFF5616 at 239.013 kb on - strand, within GFF5616 at 239.013 kb on - strand, within GFF5616 at 239.174 kb on + strand, within GFF5616 at 239.201 kb on + strand, within GFF5616 at 239.201 kb on + strand, within GFF5616 at 239.202 kb on - strand, within GFF5616 at 239.202 kb on - strand, within GFF5616 at 239.223 kb on - strand, within GFF5616 at 239.744 kb on + strand, within GFF5616 at 239.744 kb on + strand, within GFF5616 at 239.744 kb on + strand, within GFF5616 at 239.744 kb on + strand, within GFF5616 at 239.745 kb on - strand, within GFF5616 at 239.745 kb on - strand, within GFF5616
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 237,431 - GFF5614 0.88 -0.6 237,431 - GFF5614 0.88 -0.3 237,548 + -0.8 237,548 + +0.5 237,548 + -1.1 237,569 - -0.6 238,005 - GFF5615 0.34 +0.7 238,142 + GFF5615 0.46 -0.2 238,395 - GFF5615 0.68 +0.3 238,568 + GFF5615 0.83 -0.4 238,569 - GFF5615 0.83 +2.1 238,709 + -0.4 238,710 - +0.7 238,710 - -0.1 238,763 + +0.1 238,763 + -1.5 238,764 - +0.6 238,764 - -0.3 238,841 + +0.7 238,842 - +0.6 238,842 - +0.5 238,842 - +0.5 239,012 + GFF5616 0.16 -0.1 239,013 - GFF5616 0.16 +0.3 239,013 - GFF5616 0.16 +0.6 239,174 + GFF5616 0.31 +0.5 239,201 + GFF5616 0.34 -0.1 239,201 + GFF5616 0.34 +0.2 239,202 - GFF5616 0.34 -0.5 239,202 - GFF5616 0.34 -0.2 239,223 - GFF5616 0.36 -0.6 239,744 + GFF5616 0.86 +0.4 239,744 + GFF5616 0.86 +0.7 239,744 + GFF5616 0.86 -0.1 239,744 + GFF5616 0.86 -0.1 239,745 - GFF5616 0.86 -0.1 239,745 - GFF5616 0.86 +0.3
Or see this region's nucleotide sequence