Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5611 and GFF5612 are separated by 230 nucleotides GFF5612 and GFF5613 are separated by 152 nucleotides GFF5613 and GFF5614 overlap by 7 nucleotides
GFF5611 - BUG/TctC family periplasmic protein, at 232,961 to 233,935
GFF5611
GFF5612 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 234,166 to 235,629
GFF5612
GFF5613 - Intracellular protease, at 235,782 to 236,351
GFF5613
GFF5614 - hypothetical protein, at 236,345 to 237,574
GFF5614
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.178 kb on + strand, within GFF5611 at 233.178 kb on + strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.286 kb on + strand, within GFF5611 at 233.287 kb on - strand, within GFF5611 at 233.398 kb on - strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.533 kb on - strand, within GFF5611 at 233.533 kb on - strand, within GFF5611 at 233.686 kb on - strand, within GFF5611 at 233.970 kb on + strand at 233.971 kb on - strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.996 kb on - strand at 234.002 kb on + strand at 234.002 kb on + strand at 234.003 kb on - strand at 234.211 kb on + strand at 234.211 kb on + strand at 234.212 kb on - strand at 234.503 kb on - strand, within GFF5612 at 234.503 kb on - strand, within GFF5612 at 234.503 kb on - strand, within GFF5612 at 234.550 kb on + strand, within GFF5612 at 234.550 kb on + strand, within GFF5612 at 234.551 kb on - strand, within GFF5612 at 234.551 kb on - strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.057 kb on + strand, within GFF5612 at 235.058 kb on - strand, within GFF5612 at 235.058 kb on - strand, within GFF5612 at 235.274 kb on - strand, within GFF5612 at 235.274 kb on - strand, within GFF5612 at 235.420 kb on + strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.421 kb on - strand, within GFF5612 at 235.426 kb on + strand, within GFF5612 at 235.570 kb on + strand at 235.571 kb on - strand at 235.571 kb on - strand at 235.600 kb on + strand at 235.600 kb on + strand at 235.600 kb on + strand at 235.601 kb on - strand at 235.601 kb on - strand at 235.601 kb on - strand at 235.653 kb on + strand at 236.331 kb on + strand at 236.331 kb on + strand at 236.407 kb on + strand at 236.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 233,178 + GFF5611 0.22 -0.2 233,178 + GFF5611 0.22 +0.5 233,179 - GFF5611 0.22 -0.3 233,179 - GFF5611 0.22 +0.1 233,179 - GFF5611 0.22 -0.8 233,286 + GFF5611 0.33 +1.5 233,287 - GFF5611 0.33 -0.4 233,398 - GFF5611 0.45 +0.7 233,532 + GFF5611 0.59 -0.0 233,532 + GFF5611 0.59 -0.2 233,532 + GFF5611 0.59 +0.4 233,533 - GFF5611 0.59 -0.1 233,533 - GFF5611 0.59 -0.6 233,686 - GFF5611 0.74 -0.7 233,970 + +0.8 233,971 - -1.0 233,993 + +0.8 233,993 + +0.1 233,993 + +0.4 233,993 + +0.1 233,993 + -0.2 233,993 + -0.4 233,993 + -1.3 233,994 - +0.3 233,994 - -0.2 233,994 - +0.5 233,994 - +2.1 233,996 - -1.9 234,002 + -0.1 234,002 + +0.0 234,003 - -0.0 234,211 + +0.2 234,211 + +0.6 234,212 - +0.2 234,503 - GFF5612 0.23 +0.4 234,503 - GFF5612 0.23 +0.1 234,503 - GFF5612 0.23 +0.4 234,550 + GFF5612 0.26 +2.5 234,550 + GFF5612 0.26 +1.0 234,551 - GFF5612 0.26 +0.8 234,551 - GFF5612 0.26 -0.2 235,057 + GFF5612 0.61 +0.2 235,057 + GFF5612 0.61 -0.3 235,057 + GFF5612 0.61 -0.1 235,057 + GFF5612 0.61 -0.6 235,057 + GFF5612 0.61 -0.5 235,057 + GFF5612 0.61 +0.3 235,058 - GFF5612 0.61 +0.3 235,058 - GFF5612 0.61 -1.4 235,274 - GFF5612 0.76 -1.0 235,274 - GFF5612 0.76 -1.2 235,420 + GFF5612 0.86 -1.0 235,421 - GFF5612 0.86 +0.3 235,421 - GFF5612 0.86 +0.2 235,421 - GFF5612 0.86 -0.1 235,426 + GFF5612 0.86 -0.5 235,570 + +2.1 235,571 - -0.4 235,571 - -0.4 235,600 + +0.2 235,600 + +0.4 235,600 + +0.4 235,601 - +0.5 235,601 - -0.1 235,601 - +0.2 235,653 + +0.2 236,331 + +1.1 236,331 + -0.9 236,407 + +0.6 236,407 + -0.3
Or see this region's nucleotide sequence