Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5550 and GFF5551 are separated by 74 nucleotides GFF5551 and GFF5552 are separated by 2 nucleotides GFF5552 and GFF5553 are separated by 2 nucleotides GFF5553 and GFF5554 are separated by 12 nucleotides
GFF5550 - DNA protection during starvation protein, at 179,335 to 179,910
GFF5550
GFF5551 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 179,985 to 180,845
GFF5551
GFF5552 - MaoC domain protein dehydratase, at 180,848 to 181,333
GFF5552
GFF5553 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 181,336 to 182,193
GFF5553
GFF5554 - FIG00347521: hypothetical protein, at 182,206 to 183,366
GFF5554
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.831 kb on + strand at 180.832 kb on - strand at 180.832 kb on - strand at 180.945 kb on - strand, within GFF5552 at 180.950 kb on - strand, within GFF5552 at 181.019 kb on + strand, within GFF5552 at 181.019 kb on + strand, within GFF5552 at 181.020 kb on - strand, within GFF5552 at 181.020 kb on - strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 182.207 kb on + strand at 182.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 180,831 + -0.3 180,832 - -0.1 180,832 - -0.3 180,945 - GFF5552 0.20 +0.2 180,950 - GFF5552 0.21 -0.6 181,019 + GFF5552 0.35 +1.1 181,019 + GFF5552 0.35 -1.1 181,020 - GFF5552 0.35 -0.2 181,020 - GFF5552 0.35 -0.0 181,127 + GFF5552 0.57 +0.4 181,127 + GFF5552 0.57 +1.5 181,127 + GFF5552 0.57 -1.5 181,127 + GFF5552 0.57 +0.3 181,127 + GFF5552 0.57 -1.1 181,127 + GFF5552 0.57 -0.5 181,128 - GFF5552 0.58 -0.2 181,128 - GFF5552 0.58 -1.1 181,128 - GFF5552 0.58 -1.2 181,128 - GFF5552 0.58 -0.1 182,207 + -0.0 182,208 - -1.9
Or see this region's nucleotide sequence