Strain Fitness in Variovorax sp. SCN45 around GFF5543

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5540 and GFF5541 are separated by 15 nucleotidesGFF5541 and GFF5542 overlap by 4 nucleotidesGFF5542 and GFF5543 are separated by 173 nucleotidesGFF5543 and GFF5544 are separated by 2 nucleotidesGFF5544 and GFF5545 are separated by 10 nucleotides GFF5540 - FIG01201438: hypothetical protein, at 169,949 to 170,389 GFF5540 GFF5541 - Transcriptional regulator, GntR family, at 170,405 to 171,109 GFF5541 GFF5542 - no description, at 171,106 to 171,207 GFF5542 GFF5543 - FIG015373: Membrane protein, at 171,381 to 172,118 GFF5543 GFF5544 - FIG001614: Membrane protein, at 172,121 to 173,077 GFF5544 GFF5545 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 173,088 to 173,771 GFF5545 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1 2 3at 170.442 kb on + strandat 170.442 kb on + strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.556 kb on + strand, within GFF5541at 170.556 kb on + strand, within GFF5541at 170.557 kb on - strand, within GFF5541at 170.784 kb on + strand, within GFF5541at 170.784 kb on + strand, within GFF5541at 170.785 kb on - strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 171.119 kb on + strand, within GFF5542at 171.119 kb on + strand, within GFF5542at 171.119 kb on + strand, within GFF5542at 171.119 kb on + strand, within GFF5542at 171.119 kb on + strand, within GFF5542at 171.119 kb on + strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.120 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.152 kb on - strand, within GFF5542at 171.268 kb on + strandat 171.269 kb on - strandat 171.269 kb on - strandat 171.269 kb on - strandat 171.269 kb on - strandat 171.269 kb on - strandat 171.690 kb on + strand, within GFF5543at 171.691 kb on - strand, within GFF5543at 171.691 kb on - strand, within GFF5543at 171.691 kb on - strand, within GFF5543at 171.846 kb on + strand, within GFF5543at 171.846 kb on + strand, within GFF5543at 171.846 kb on + strand, within GFF5543at 171.847 kb on - strand, within GFF5543at 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.145 kb on + strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.146 kb on - strandat 172.217 kb on + strand, within GFF5544at 172.217 kb on + strand, within GFF5544at 172.217 kb on + strand, within GFF5544at 172.217 kb on + strand, within GFF5544at 172.217 kb on + strand, within GFF5544at 172.218 kb on - strand, within GFF5544at 172.218 kb on - strand, within GFF5544at 172.218 kb on - strand, within GFF5544at 172.218 kb on - strand, within GFF5544at 172.244 kb on + strand, within GFF5544at 172.244 kb on + strand, within GFF5544at 172.244 kb on + strand, within GFF5544at 172.244 kb on + strand, within GFF5544at 172.244 kb on + strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.245 kb on - strand, within GFF5544at 172.376 kb on + strand, within GFF5544at 172.376 kb on + strand, within GFF5544at 172.376 kb on + strand, within GFF5544at 172.376 kb on + strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.377 kb on - strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.724 kb on + strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.725 kb on - strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.763 kb on + strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.764 kb on - strand, within GFF5544at 172.865 kb on + strand, within GFF5544at 172.865 kb on + strand, within GFF5544at 172.865 kb on + strand, within GFF5544at 172.865 kb on + strand, within GFF5544at 172.865 kb on + strand, within GFF5544at 172.866 kb on - strand, within GFF5544at 172.866 kb on - strand, within GFF5544at 172.913 kb on + strand, within GFF5544at 172.914 kb on - strand, within GFF5544at 173.013 kb on + strandat 173.013 kb on + strandat 173.013 kb on + strandat 173.014 kb on - strandat 173.014 kb on - strandat 173.014 kb on - strandat 173.057 kb on + strandat 173.057 kb on + strandat 173.057 kb on + strandat 173.058 kb on - strandat 173.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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170,442 + -0.5
170,442 + +0.2
170,443 - +0.5
170,443 - -0.9
170,443 - +1.5
170,443 - -0.1
170,443 - +0.3
170,443 - +0.5
170,478 + GFF5541 0.10 -1.1
170,478 + GFF5541 0.10 -0.3
170,478 + GFF5541 0.10 +0.3
170,478 + GFF5541 0.10 -0.9
170,479 - GFF5541 0.10 -0.5
170,479 - GFF5541 0.10 -0.4
170,479 - GFF5541 0.10 +1.6
170,479 - GFF5541 0.10 +0.5
170,479 - GFF5541 0.10 +1.3
170,479 - GFF5541 0.10 -0.7
170,556 + GFF5541 0.21 -0.4
170,556 + GFF5541 0.21 +0.5
170,557 - GFF5541 0.22 +0.6
170,784 + GFF5541 0.54 -0.1
170,784 + GFF5541 0.54 -0.6
170,785 - GFF5541 0.54 +0.3
170,829 + GFF5541 0.60 +0.7
170,829 + GFF5541 0.60 -0.9
170,829 + GFF5541 0.60 +2.1
170,829 + GFF5541 0.60 +0.3
170,829 + GFF5541 0.60 +0.5
170,829 + GFF5541 0.60 +0.3
170,830 - GFF5541 0.60 +0.5
170,830 - GFF5541 0.60 -0.5
170,830 - GFF5541 0.60 -0.6
170,830 - GFF5541 0.60 -0.2
170,830 - GFF5541 0.60 +0.2
170,830 - GFF5541 0.60 +0.2
170,830 - GFF5541 0.60 +0.9
170,830 - GFF5541 0.60 -0.2
170,830 - GFF5541 0.60 +3.1
170,830 - GFF5541 0.60 -1.1
170,830 - GFF5541 0.60 +0.6
170,830 - GFF5541 0.60 +0.0
170,830 - GFF5541 0.60 -1.6
171,119 + GFF5542 0.13 -0.3
171,119 + GFF5542 0.13 -0.1
171,119 + GFF5542 0.13 -0.3
171,119 + GFF5542 0.13 +1.2
171,119 + GFF5542 0.13 -0.7
171,119 + GFF5542 0.13 -0.4
171,120 - GFF5542 0.14 -0.8
171,120 - GFF5542 0.14 -0.9
171,120 - GFF5542 0.14 -0.3
171,120 - GFF5542 0.14 -0.7
171,120 - GFF5542 0.14 -0.4
171,120 - GFF5542 0.14 -0.7
171,120 - GFF5542 0.14 +0.8
171,120 - GFF5542 0.14 -0.9
171,120 - GFF5542 0.14 -0.5
171,152 - GFF5542 0.45 -2.1
171,152 - GFF5542 0.45 -1.3
171,152 - GFF5542 0.45 -0.5
171,152 - GFF5542 0.45 +0.9
171,152 - GFF5542 0.45 -0.4
171,152 - GFF5542 0.45 -0.5
171,152 - GFF5542 0.45 -0.0
171,268 + +0.7
171,269 - -0.4
171,269 - +0.5
171,269 - -0.1
171,269 - -0.9
171,269 - -1.6
171,690 + GFF5543 0.42 +2.5
171,691 - GFF5543 0.42 +1.4
171,691 - GFF5543 0.42 -1.0
171,691 - GFF5543 0.42 +0.5
171,846 + GFF5543 0.63 +0.1
171,846 + GFF5543 0.63 +0.6
171,846 + GFF5543 0.63 -2.0
171,847 - GFF5543 0.63 +0.1
172,145 + -0.1
172,145 + -0.1
172,145 + +0.3
172,145 + +1.7
172,145 + +0.5
172,145 + -0.3
172,145 + +1.3
172,145 + -0.3
172,145 + -0.6
172,145 + -0.1
172,145 + +0.1
172,145 + +1.1
172,145 + -1.5
172,145 + -1.4
172,145 + -0.4
172,145 + -1.6
172,145 + -0.4
172,145 + -0.7
172,145 + -0.1
172,146 - -0.1
172,146 - +0.0
172,146 - -1.8
172,146 - -0.3
172,146 - -0.7
172,146 - -0.3
172,146 - -0.8
172,146 - -0.4
172,146 - -0.4
172,146 - -0.5
172,146 - -0.4
172,146 - -0.1
172,146 - +1.1
172,146 - -0.5
172,146 - -0.7
172,146 - -0.6
172,146 - -0.0
172,146 - -0.4
172,146 - +0.8
172,146 - -1.7
172,146 - -0.1
172,217 + GFF5544 0.10 -1.1
172,217 + GFF5544 0.10 +0.2
172,217 + GFF5544 0.10 -0.6
172,217 + GFF5544 0.10 +1.5
172,217 + GFF5544 0.10 +0.1
172,218 - GFF5544 0.10 -0.8
172,218 - GFF5544 0.10 -0.2
172,218 - GFF5544 0.10 +0.5
172,218 - GFF5544 0.10 -0.1
172,244 + GFF5544 0.13 +0.4
172,244 + GFF5544 0.13 -0.3
172,244 + GFF5544 0.13 +0.1
172,244 + GFF5544 0.13 -0.3
172,244 + GFF5544 0.13 -1.0
172,245 - GFF5544 0.13 -0.4
172,245 - GFF5544 0.13 +0.3
172,245 - GFF5544 0.13 +0.1
172,245 - GFF5544 0.13 -0.3
172,245 - GFF5544 0.13 -0.5
172,245 - GFF5544 0.13 -0.1
172,376 + GFF5544 0.27 -0.9
172,376 + GFF5544 0.27 +0.2
172,376 + GFF5544 0.27 -0.8
172,376 + GFF5544 0.27 +1.0
172,377 - GFF5544 0.27 +2.5
172,377 - GFF5544 0.27 +0.5
172,377 - GFF5544 0.27 -0.1
172,377 - GFF5544 0.27 -0.3
172,377 - GFF5544 0.27 +0.2
172,377 - GFF5544 0.27 +0.3
172,724 + GFF5544 0.63 +0.1
172,724 + GFF5544 0.63 -0.3
172,724 + GFF5544 0.63 +0.3
172,724 + GFF5544 0.63 +0.3
172,724 + GFF5544 0.63 -0.3
172,724 + GFF5544 0.63 -0.5
172,724 + GFF5544 0.63 -1.9
172,724 + GFF5544 0.63 -0.7
172,724 + GFF5544 0.63 -0.7
172,724 + GFF5544 0.63 +0.5
172,724 + GFF5544 0.63 -0.3
172,724 + GFF5544 0.63 -0.9
172,724 + GFF5544 0.63 -1.3
172,724 + GFF5544 0.63 -0.3
172,724 + GFF5544 0.63 +0.6
172,724 + GFF5544 0.63 -1.0
172,725 - GFF5544 0.63 +0.2
172,725 - GFF5544 0.63 -0.6
172,725 - GFF5544 0.63 +0.1
172,725 - GFF5544 0.63 -0.8
172,725 - GFF5544 0.63 -0.4
172,725 - GFF5544 0.63 -1.6
172,725 - GFF5544 0.63 -0.3
172,725 - GFF5544 0.63 -0.1
172,725 - GFF5544 0.63 -0.4
172,725 - GFF5544 0.63 +0.6
172,725 - GFF5544 0.63 -0.2
172,725 - GFF5544 0.63 +0.3
172,725 - GFF5544 0.63 -1.1
172,725 - GFF5544 0.63 -1.1
172,725 - GFF5544 0.63 -0.6
172,725 - GFF5544 0.63 -0.1
172,725 - GFF5544 0.63 +3.1
172,725 - GFF5544 0.63 +0.3
172,725 - GFF5544 0.63 -0.6
172,725 - GFF5544 0.63 -0.5
172,725 - GFF5544 0.63 -0.5
172,725 - GFF5544 0.63 -0.3
172,725 - GFF5544 0.63 -0.2
172,763 + GFF5544 0.67 +0.4
172,763 + GFF5544 0.67 -0.5
172,763 + GFF5544 0.67 +0.4
172,763 + GFF5544 0.67 -1.1
172,763 + GFF5544 0.67 -0.0
172,763 + GFF5544 0.67 +0.4
172,763 + GFF5544 0.67 -0.2
172,763 + GFF5544 0.67 +0.3
172,763 + GFF5544 0.67 -0.4
172,763 + GFF5544 0.67 +1.3
172,764 - GFF5544 0.67 -0.6
172,764 - GFF5544 0.67 +0.1
172,764 - GFF5544 0.67 +0.5
172,764 - GFF5544 0.67 -1.2
172,764 - GFF5544 0.67 +0.6
172,764 - GFF5544 0.67 -0.2
172,764 - GFF5544 0.67 +0.1
172,764 - GFF5544 0.67 -0.3
172,764 - GFF5544 0.67 -0.1
172,865 + GFF5544 0.78 -0.5
172,865 + GFF5544 0.78 -0.5
172,865 + GFF5544 0.78 -0.1
172,865 + GFF5544 0.78 +0.7
172,865 + GFF5544 0.78 -0.5
172,866 - GFF5544 0.78 +0.6
172,866 - GFF5544 0.78 -0.1
172,913 + GFF5544 0.83 -0.3
172,914 - GFF5544 0.83 +0.6
173,013 + -0.0
173,013 + +0.6
173,013 + -0.2
173,014 - -0.5
173,014 - +0.5
173,014 - +0.8
173,057 + -0.1
173,057 + +1.3
173,057 + -1.1
173,058 - -0.6
173,058 - -1.2

Or see this region's nucleotide sequence