Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF53 and GFF54 are separated by 26 nucleotides GFF54 and GFF55 overlap by 4 nucleotides GFF55 and GFF56 overlap by 8 nucleotides GFF56 and GFF57 are separated by 67 nucleotides
GFF53 - Polyketide synthase modules and related proteins, at 64,080 to 69,116
GFF53
GFF54 - 4'-phosphopantetheinyl transferase (EC 2.7.8.-), at 69,143 to 69,856
GFF54
GFF55 - hypothetical protein, at 69,853 to 70,671
GFF55
GFF56 - hypothetical protein, at 70,664 to 71,593
GFF56
GFF57 - Putative polysaccharide export protein YccZ precursor, at 71,661 to 72,872
GFF57
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1 at 68.947 kb on - strand at 70.057 kb on + strand, within GFF55 at 70.058 kb on - strand, within GFF55 at 70.335 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.570 kb on + strand, within GFF55 at 70.571 kb on - strand, within GFF55 at 71.327 kb on + strand, within GFF56 at 71.327 kb on + strand, within GFF56 at 71.328 kb on - strand, within GFF56 at 71.328 kb on - strand, within GFF56 at 71.328 kb on - strand, within GFF56 at 71.412 kb on - strand, within GFF56 at 71.616 kb on + strand at 71.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 68,947 - +0.0 70,057 + GFF55 0.25 +0.5 70,058 - GFF55 0.25 -0.6 70,335 + GFF55 0.59 -0.1 70,570 + GFF55 0.88 -0.2 70,570 + GFF55 0.88 -0.4 70,570 + GFF55 0.88 -0.7 70,570 + GFF55 0.88 -0.5 70,570 + GFF55 0.88 -0.3 70,570 + GFF55 0.88 -0.9 70,571 - GFF55 0.88 +0.3 71,327 + GFF56 0.71 +0.1 71,327 + GFF56 0.71 +1.0 71,328 - GFF56 0.71 +0.1 71,328 - GFF56 0.71 -1.3 71,328 - GFF56 0.71 +0.4 71,412 - GFF56 0.80 -1.4 71,616 + -0.4 71,617 - -1.9
Or see this region's nucleotide sequence