Strain Fitness in Variovorax sp. SCN45 around GFF5498

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5497 and GFF5498 overlap by 4 nucleotidesGFF5498 and GFF5499 overlap by 4 nucleotides GFF5497 - MBL-fold metallo-hydrolase superfamily, at 128,185 to 129,162 GFF5497 GFF5498 - Uncharacterized protein SPO0681, at 129,159 to 129,365 GFF5498 GFF5499 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 129,362 to 131,014 GFF5499 Position (kb) 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 128.270 kb on + strandat 128.270 kb on + strandat 128.270 kb on + strandat 128.270 kb on + strandat 128.271 kb on - strandat 128.271 kb on - strandat 128.271 kb on - strandat 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.552 kb on + strand, within GFF5497at 128.553 kb on - strand, within GFF5497at 128.553 kb on - strand, within GFF5497at 128.553 kb on - strand, within GFF5497at 128.567 kb on + strand, within GFF5497at 128.568 kb on - strand, within GFF5497at 128.568 kb on - strand, within GFF5497at 128.918 kb on + strand, within GFF5497at 128.918 kb on + strand, within GFF5497at 128.918 kb on + strand, within GFF5497at 128.919 kb on - strand, within GFF5497at 128.919 kb on - strand, within GFF5497at 128.919 kb on - strand, within GFF5497at 128.919 kb on - strand, within GFF5497at 129.074 kb on + strandat 129.074 kb on + strandat 129.074 kb on + strandat 129.074 kb on + strandat 129.074 kb on + strandat 129.075 kb on - strandat 129.075 kb on - strandat 129.075 kb on - strandat 129.075 kb on - strandat 129.075 kb on - strandat 129.075 kb on - strandat 129.081 kb on - strandat 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.325 kb on + strand, within GFF5498at 129.326 kb on - strand, within GFF5498at 129.326 kb on - strand, within GFF5498at 129.326 kb on - strand, within GFF5498at 129.326 kb on - strand, within GFF5498at 129.450 kb on + strandat 129.450 kb on + strandat 129.451 kb on - strandat 129.451 kb on - strandat 129.451 kb on - strandat 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.638 kb on + strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.639 kb on - strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.939 kb on + strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 129.940 kb on - strand, within GFF5499at 130.128 kb on + strand, within GFF5499at 130.128 kb on + strand, within GFF5499at 130.129 kb on - strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.215 kb on + strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.216 kb on - strand, within GFF5499at 130.245 kb on + strand, within GFF5499at 130.246 kb on - strand, within GFF5499

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
128,270 + -0.6
128,270 + +0.5
128,270 + +0.1
128,270 + -1.1
128,271 - +0.3
128,271 - +0.7
128,271 - +0.5
128,552 + GFF5497 0.38 +0.4
128,552 + GFF5497 0.38 +0.5
128,552 + GFF5497 0.38 +0.7
128,552 + GFF5497 0.38 +0.5
128,552 + GFF5497 0.38 -1.7
128,552 + GFF5497 0.38 -0.1
128,552 + GFF5497 0.38 +1.5
128,553 - GFF5497 0.38 -0.5
128,553 - GFF5497 0.38 +0.1
128,553 - GFF5497 0.38 +1.6
128,567 + GFF5497 0.39 +0.2
128,568 - GFF5497 0.39 +0.2
128,568 - GFF5497 0.39 -0.6
128,918 + GFF5497 0.75 +0.6
128,918 + GFF5497 0.75 -0.7
128,918 + GFF5497 0.75 -1.3
128,919 - GFF5497 0.75 -0.2
128,919 - GFF5497 0.75 +0.3
128,919 - GFF5497 0.75 -0.4
128,919 - GFF5497 0.75 +0.5
129,074 + -0.8
129,074 + +0.4
129,074 + +0.1
129,074 + -0.4
129,074 + -0.2
129,075 - -0.4
129,075 - -0.3
129,075 - +1.1
129,075 - +1.7
129,075 - -0.6
129,075 - +0.4
129,081 - +0.5
129,325 + GFF5498 0.80 -0.2
129,325 + GFF5498 0.80 -0.0
129,325 + GFF5498 0.80 -0.5
129,325 + GFF5498 0.80 +0.5
129,325 + GFF5498 0.80 -0.4
129,325 + GFF5498 0.80 +0.2
129,325 + GFF5498 0.80 -0.5
129,325 + GFF5498 0.80 +0.7
129,325 + GFF5498 0.80 -0.3
129,325 + GFF5498 0.80 -0.1
129,325 + GFF5498 0.80 -0.0
129,325 + GFF5498 0.80 +1.6
129,325 + GFF5498 0.80 -0.4
129,325 + GFF5498 0.80 -1.2
129,325 + GFF5498 0.80 -0.9
129,325 + GFF5498 0.80 +0.1
129,326 - GFF5498 0.81 -0.6
129,326 - GFF5498 0.81 -0.0
129,326 - GFF5498 0.81 -0.2
129,326 - GFF5498 0.81 -0.5
129,450 + +0.5
129,450 + +0.3
129,451 - -0.9
129,451 - -0.0
129,451 - +0.1
129,638 + GFF5499 0.17 -0.6
129,638 + GFF5499 0.17 +1.1
129,638 + GFF5499 0.17 +0.4
129,638 + GFF5499 0.17 +2.6
129,638 + GFF5499 0.17 -0.0
129,638 + GFF5499 0.17 -0.7
129,638 + GFF5499 0.17 -1.8
129,638 + GFF5499 0.17 +0.1
129,638 + GFF5499 0.17 -1.0
129,638 + GFF5499 0.17 -0.6
129,638 + GFF5499 0.17 +0.2
129,638 + GFF5499 0.17 +0.7
129,638 + GFF5499 0.17 -0.8
129,638 + GFF5499 0.17 -1.6
129,638 + GFF5499 0.17 -0.0
129,639 - GFF5499 0.17 -0.3
129,639 - GFF5499 0.17 +0.2
129,639 - GFF5499 0.17 -0.6
129,639 - GFF5499 0.17 -0.5
129,639 - GFF5499 0.17 +0.5
129,639 - GFF5499 0.17 -0.1
129,639 - GFF5499 0.17 +0.4
129,639 - GFF5499 0.17 -0.1
129,639 - GFF5499 0.17 -0.5
129,939 + GFF5499 0.35 -0.0
129,939 + GFF5499 0.35 -0.8
129,939 + GFF5499 0.35 +1.5
129,939 + GFF5499 0.35 -1.5
129,939 + GFF5499 0.35 -1.2
129,939 + GFF5499 0.35 -0.4
129,939 + GFF5499 0.35 -2.1
129,939 + GFF5499 0.35 -0.6
129,939 + GFF5499 0.35 -0.8
129,939 + GFF5499 0.35 -0.7
129,939 + GFF5499 0.35 -0.3
129,939 + GFF5499 0.35 +0.3
129,940 - GFF5499 0.35 -0.7
129,940 - GFF5499 0.35 -0.3
129,940 - GFF5499 0.35 +1.7
129,940 - GFF5499 0.35 -0.4
129,940 - GFF5499 0.35 -0.6
129,940 - GFF5499 0.35 -0.6
129,940 - GFF5499 0.35 +1.5
130,128 + GFF5499 0.46 +0.7
130,128 + GFF5499 0.46 -0.5
130,129 - GFF5499 0.46 +0.5
130,215 + GFF5499 0.52 -0.2
130,215 + GFF5499 0.52 -0.0
130,215 + GFF5499 0.52 +0.5
130,215 + GFF5499 0.52 -0.3
130,215 + GFF5499 0.52 -0.2
130,215 + GFF5499 0.52 -0.3
130,215 + GFF5499 0.52 -1.5
130,216 - GFF5499 0.52 +0.4
130,216 - GFF5499 0.52 -0.7
130,216 - GFF5499 0.52 -0.2
130,216 - GFF5499 0.52 -0.8
130,216 - GFF5499 0.52 -0.5
130,216 - GFF5499 0.52 -0.9
130,216 - GFF5499 0.52 +0.1
130,216 - GFF5499 0.52 +0.1
130,216 - GFF5499 0.52 -0.6
130,216 - GFF5499 0.52 -0.9
130,216 - GFF5499 0.52 -0.3
130,216 - GFF5499 0.52 +0.5
130,216 - GFF5499 0.52 +0.6
130,216 - GFF5499 0.52 -0.9
130,216 - GFF5499 0.52 -0.3
130,245 + GFF5499 0.53 +0.1
130,246 - GFF5499 0.53 -0.0

Or see this region's nucleotide sequence