Strain Fitness in Variovorax sp. SCN45 around GFF5476

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
106,256	+				-0.7
106,257	-				+1.2
106,294	+				-0.3
106,405	+				+0.1
106,405	+				+0.8
106,405	+				+0.6
106,405	+				-0.7
106,405	+				-0.2
106,405	+				-0.9
106,406	-		GFF5476	0.10	+1.8
106,406	-		GFF5476	0.10	-0.9
106,406	-		GFF5476	0.10	+0.5
106,406	-		GFF5476	0.10	-3.1
106,406	-		GFF5476	0.10	+0.1
106,406	-		GFF5476	0.10	+0.2
106,426	+		GFF5476	0.13	+0.3
106,426	+		GFF5476	0.13	-0.2
106,426	+		GFF5476	0.13	+1.7
106,427	-		GFF5476	0.13	+0.7
106,427	-		GFF5476	0.13	-1.6
106,427	-		GFF5476	0.13	+0.1
106,438	+		GFF5476	0.14	-2.1
106,448	-		GFF5476	0.15	-0.5
106,448	-		GFF5476	0.15	-0.3
106,448	-		GFF5476	0.15	-0.5
106,474	+		GFF5476	0.19	+2.3
106,475	-		GFF5476	0.19	-0.6
106,588	+		GFF5476	0.34	+0.3
106,588	+		GFF5476	0.34	+0.8
106,588	+		GFF5476	0.34	+0.5
106,589	-		GFF5476	0.34	-0.7
106,589	-		GFF5476	0.34	+0.7
106,687	+		GFF5476	0.46	-0.3
106,687	+		GFF5476	0.46	+0.8
106,687	+		GFF5476	0.46	+0.3
106,687	+		GFF5476	0.46	+0.2
106,687	+		GFF5476	0.46	+0.7
106,687	+		GFF5476	0.46	+0.8
106,687	+		GFF5476	0.46	+0.1
106,687	+		GFF5476	0.46	+4.3
106,687	+		GFF5476	0.46	-1.5
106,687	+		GFF5476	0.46	+0.5
106,687	+		GFF5476	0.46	+0.4
106,688	-		GFF5476	0.47	+1.6
106,688	-		GFF5476	0.47	+4.1
106,688	-		GFF5476	0.47	-0.1
106,688	-		GFF5476	0.47	+1.1
106,688	-		GFF5476	0.47	-1.7
106,688	-		GFF5476	0.47	-0.7
106,688	-		GFF5476	0.47	+0.6
106,688	-		GFF5476	0.47	-0.3
106,688	-		GFF5476	0.47	-0.3
106,873	+		GFF5476	0.71	+2.5
106,873	+		GFF5476	0.71	-0.4
106,873	+		GFF5476	0.71	+0.5
106,873	+		GFF5476	0.71	+0.5
106,873	+		GFF5476	0.71	+0.1
106,873	+		GFF5476	0.71	+0.8
106,873	+		GFF5476	0.71	-0.7
106,873	+		GFF5476	0.71	+1.2
106,873	+		GFF5476	0.71	-0.4
106,873	+		GFF5476	0.71	-0.6
106,873	+		GFF5476	0.71	+0.1
106,873	+		GFF5476	0.71	+1.3
106,873	+		GFF5476	0.71	+1.5
106,874	-		GFF5476	0.71	+0.4
106,874	-		GFF5476	0.71	-0.9
106,874	-		GFF5476	0.71	+0.8
106,874	-		GFF5476	0.71	-0.8
106,874	-		GFF5476	0.71	+0.7
106,874	-		GFF5476	0.71	-0.6
106,874	-		GFF5476	0.71	-0.9
106,874	-		GFF5476	0.71	+0.6
106,874	-		GFF5476	0.71	-1.0
106,874	-		GFF5476	0.71	-0.1
106,874	-		GFF5476	0.71	+0.1
107,044	+				-0.4
107,044	+				-0.1
107,044	+				-1.4
107,044	+				-0.0
107,044	+				-0.4
107,045	-				-0.1
107,045	-				-0.4
107,045	-				+0.0
107,045	-				-0.1
107,045	-				+0.4
107,045	-				-0.5
107,045	-				+1.5
107,045	-				+0.5
107,045	-				-1.0
107,045	-				-0.7
107,103	+				+0.7
107,103	+				-0.5
107,103	+				-0.6
107,103	+				-0.3
107,103	+				+0.1
107,103	+				-1.0
107,103	+				+0.7
107,103	+				-0.9
107,103	+				+0.1
107,103	+				-0.7
107,103	+				+1.0
107,103	+				-0.3
107,103	+				-1.8
107,103	+				-0.9
107,103	+				-1.2
107,103	+				+0.1
107,103	+				-0.1
107,103	+				-0.3
107,103	+				-0.3
107,104	-				-0.6
107,104	-				-0.6
107,104	-				-0.1
107,104	-				-0.2
107,104	-				-1.1
107,104	-				+0.3
107,104	-				-0.8
107,104	-				+2.2
107,104	-				+3.1
107,104	-				+1.5
107,104	-				+1.2
107,104	-				+1.2
107,104	-				-0.4
107,104	-				+0.2
107,104	-				-0.9
107,104	-				+0.1
107,104	-				-0.7
107,224	+				-0.3
107,224	+				-1.2
107,224	+				+0.3
107,224	+				-0.7
107,224	+				+0.7
107,224	+				-0.1
107,224	-				-0.8
107,225	-				-0.5
107,225	-				-0.8
107,225	-				-0.3
107,225	-				-0.4
107,225	-				-0.9
107,225	-				-0.2
107,225	-				-0.8
107,225	-				+0.7
107,225	-				-0.3
107,225	-				-1.3
107,225	-				-0.5
107,236	+				+0.5
107,236	+				+4.6
107,236	+				+3.6
107,236	+				-0.0
107,236	+				-0.4
107,236	+				+0.3
107,236	+				+0.2
107,236	+				-1.0
107,237	-				-0.2
107,237	-				+0.6
107,237	-				+1.3
107,237	-				+0.2
107,237	-				-0.5
107,237	-				-0.1
107,237	-				+0.2
107,383	+		GFF5477	0.26	-0.5
107,384	-		GFF5477	0.26	-0.3
107,620	+		GFF5477	0.57	-0.7
107,620	+		GFF5477	0.57	-0.8
107,620	+		GFF5477	0.57	-0.1
107,620	+		GFF5477	0.57	+0.4
107,620	+		GFF5477	0.57	-0.5
107,621	-		GFF5477	0.57	-0.7
107,621	-		GFF5477	0.57	+0.6
107,621	-		GFF5477	0.57	+0.7
107,638	+		GFF5477	0.59	+0.3
107,638	+		GFF5477	0.59	-0.3
107,638	+		GFF5477	0.59	-0.8
107,638	+		GFF5477	0.59	+2.1
107,638	+		GFF5477	0.59	+0.1
107,638	+		GFF5477	0.59	+1.8
107,638	+		GFF5477	0.59	+0.1
107,638	+		GFF5477	0.59	-0.8
107,638	+		GFF5477	0.59	-0.9
107,639	-		GFF5477	0.59	+0.5
107,639	-		GFF5477	0.59	-0.2
107,639	-		GFF5477	0.59	+1.6
107,639	-		GFF5477	0.59	-0.9
107,639	-		GFF5477	0.59	+0.0
107,639	-		GFF5477	0.59	+0.5
107,639	-		GFF5477	0.59	+0.3
107,639	-		GFF5477	0.59	+0.3
107,639	-		GFF5477	0.59	+0.7
107,839	+		GFF5477	0.85	+1.1
107,839	+		GFF5477	0.85	+0.4
107,839	+		GFF5477	0.85	+0.3
107,839	+		GFF5477	0.85	-0.4
107,839	+		GFF5477	0.85	-0.6
107,840	-		GFF5477	0.85	+1.4
107,840	-		GFF5477	0.85	+1.0
107,840	-		GFF5477	0.85	-1.0
107,840	-		GFF5477	0.85	+0.5
107,840	-		GFF5477	0.85	+0.5
107,840	-		GFF5477	0.85	+0.2
107,840	-		GFF5477	0.85	+0.6
107,840	-		GFF5477	0.85	+0.2
107,840	-		GFF5477	0.85	+0.1
107,840	-		GFF5477	0.85	-0.1
107,840	-		GFF5477	0.85	-0.7
107,840	-		GFF5477	0.85	-0.3
107,840	-		GFF5477	0.85	+0.1
107,840	-		GFF5477	0.85	+0.1
107,840	-		GFF5477	0.85	-0.9
107,997	+				-0.0
107,997	+				-0.4
107,997	+				-0.6
107,997	+				-1.1
107,997	+				-1.1
107,997	+				+1.8
107,997	+				+0.1
107,997	+				+2.6
107,997	+				-0.3
107,997	+				+1.7
107,997	+				+0.2
107,997	+				-0.4
107,997	+				-0.6
107,998	-				-0.5
107,998	-				-0.1
107,998	-				-0.5
107,998	-				+0.3
107,998	-				-0.3
107,998	-				+0.5
107,998	-				-1.5
107,998	-				-0.5
107,998	-				-0.5