Strain Fitness in Variovorax sp. SCN45 around GFF5473

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
100,965	+				+1.1
100,966	-				+0.3
101,232	+		GFF5471	0.33	-0.3
101,232	+		GFF5471	0.33	-0.4
101,233	-		GFF5471	0.33	-0.2
101,233	-		GFF5471	0.33	-1.5
101,337	+		GFF5471	0.45	-0.0
101,430	+		GFF5471	0.57	-0.2
101,430	+		GFF5471	0.57	+0.3
101,430	+		GFF5471	0.57	-1.0
101,430	+		GFF5471	0.57	+0.2
101,430	+		GFF5471	0.57	-0.1
101,430	+		GFF5471	0.57	-0.3
101,430	+		GFF5471	0.57	-0.5
101,431	-		GFF5471	0.57	+0.3
101,431	-		GFF5471	0.57	-0.3
101,431	-		GFF5471	0.57	+0.1
101,431	-		GFF5471	0.57	-0.5
101,431	-		GFF5471	0.57	-0.2
101,431	-		GFF5471	0.57	+1.1
101,431	-		GFF5471	0.57	-0.5
101,431	-		GFF5471	0.57	-0.5
101,821	+		GFF5472	0.21	-1.8
101,822	-		GFF5472	0.22	+0.9
101,827	-		GFF5472	0.26	-0.9
101,855	+		GFF5472	0.51	-1.1
101,855	+		GFF5472	0.51	+1.1
101,855	+		GFF5472	0.51	-0.3
101,856	-		GFF5472	0.52	-0.1
101,860	-		GFF5472	0.55	+0.3
101,885	+		GFF5472	0.77	-1.9
101,885	+		GFF5472	0.77	+0.7
101,885	+		GFF5472	0.77	+0.3
101,885	+		GFF5472	0.77	-0.7
101,885	+		GFF5472	0.77	+0.1
101,886	-		GFF5472	0.78	-0.5
101,886	-		GFF5472	0.78	-0.3
101,886	-		GFF5472	0.78	-0.4
101,886	-		GFF5472	0.78	+0.5
101,941	+				-0.6
101,942	-				-1.1
101,942	-				-0.4
101,942	-				-0.1
102,008	+				-0.5
102,008	+				-0.7
102,008	+				-0.1
102,008	+				-1.0
102,008	+				+0.1
102,008	+				-0.2
102,009	-				-0.3
102,009	-				+1.1
102,010	+				+0.4
102,010	+				+0.3
102,010	+				+2.4
102,010	+				+0.5
102,010	+				-1.0
102,010	+				+0.9
102,010	+				+1.1
102,010	+				+0.1
102,010	+				-0.4
102,010	+				-0.3
102,010	+				-0.9
102,010	+				-0.9
102,010	+				+0.2
102,010	+				+0.9
102,010	+				-0.3
102,010	+				+0.5
102,010	+				-0.5
102,010	+				-0.5
102,010	+				-0.1
102,010	+				-0.9
102,010	+				+0.4
102,010	+				-1.5
102,010	+				-0.4
102,011	-				+0.5
102,011	-				-0.1
102,011	-				-0.3
102,011	-				+1.7
102,011	-				+0.5
102,011	-				-0.3
102,011	-				+0.3
102,011	-				-1.8
102,011	-				-0.1
102,011	-				+0.3
102,011	-				+0.1
102,011	-				+0.7
102,011	-				-0.7
102,011	-				+0.8
102,011	-				-0.3
102,172	+				-0.1
102,172	+				+0.2
102,172	-				+0.5
102,173	-				+0.0
102,173	-				-1.5
102,173	-				-0.6
102,472	+		GFF5473	0.22	-0.8
102,472	+		GFF5473	0.22	-0.0
102,473	-		GFF5473	0.22	-0.1
102,473	-		GFF5473	0.22	-0.5
102,502	+		GFF5473	0.23	+0.3
102,502	+		GFF5473	0.23	-0.8
102,503	-		GFF5473	0.23	-0.4
102,517	+		GFF5473	0.23	-0.3
102,517	+		GFF5473	0.23	-0.3
102,518	-		GFF5473	0.24	-0.8
102,518	-		GFF5473	0.24	-0.7
102,598	+		GFF5473	0.27	-1.1
102,598	+		GFF5473	0.27	-0.3
102,599	-		GFF5473	0.27	+0.9
102,599	-		GFF5473	0.27	-0.0
102,868	+		GFF5473	0.38	-0.5
102,868	+		GFF5473	0.38	+0.4
102,869	-		GFF5473	0.38	-0.1
102,869	-		GFF5473	0.38	-0.1
102,869	-		GFF5473	0.38	-0.1
102,869	-		GFF5473	0.38	+0.6
102,869	-		GFF5473	0.38	-0.5
102,890	-		GFF5473	0.39	+0.0
102,989	-		GFF5473	0.43	-1.6
102,989	-		GFF5473	0.43	+0.1
103,006	+		GFF5473	0.43	+0.1
103,006	+		GFF5473	0.43	-0.6
103,006	+		GFF5473	0.43	-0.5
103,006	+		GFF5473	0.43	-0.5
103,006	+		GFF5473	0.43	-0.7
103,006	+		GFF5473	0.43	+0.1
103,007	-		GFF5473	0.43	-0.4
103,007	-		GFF5473	0.43	-0.7
103,007	-		GFF5473	0.43	-1.2
103,054	+		GFF5473	0.45	-0.3
103,054	+		GFF5473	0.45	-0.1
103,054	+		GFF5473	0.45	-0.0
103,054	+		GFF5473	0.45	+0.1
103,054	+		GFF5473	0.45	+0.0
103,055	-		GFF5473	0.45	-0.3
103,055	-		GFF5473	0.45	-0.8
103,055	-		GFF5473	0.45	-0.5
103,055	-		GFF5473	0.45	-0.2
103,055	-		GFF5473	0.45	-0.4
103,055	-		GFF5473	0.45	-0.2
103,061	-		GFF5473	0.46	-0.7
103,061	-		GFF5473	0.46	+0.1
103,303	+		GFF5473	0.55	-0.3
103,303	+		GFF5473	0.55	+1.7
103,303	+		GFF5473	0.55	+0.5
103,303	+		GFF5473	0.55	-0.8
103,303	+		GFF5473	0.55	+2.6
103,304	-		GFF5473	0.56	-0.8
103,304	-		GFF5473	0.56	-0.3
103,304	-		GFF5473	0.56	-0.9
103,304	-		GFF5473	0.56	-0.1
103,304	-		GFF5473	0.56	+2.1
103,304	-		GFF5473	0.56	-1.0
103,304	-		GFF5473	0.56	-0.9
103,304	-		GFF5473	0.56	+0.3
103,400	+		GFF5473	0.59	+0.6
103,446	+		GFF5473	0.61	+0.1
103,777	+		GFF5473	0.75	-1.9
103,778	-		GFF5473	0.75	-0.0
103,778	-		GFF5473	0.75	-0.1
103,919	+		GFF5473	0.81	+0.3
103,919	+		GFF5473	0.81	-0.3
103,960	+		GFF5473	0.82	+0.0
103,961	-		GFF5473	0.82	-0.5
103,961	-		GFF5473	0.82	-0.6
103,961	-		GFF5473	0.82	-0.5
103,961	-		GFF5473	0.82	+0.5
103,961	-		GFF5473	0.82	-0.0
103,961	-		GFF5473	0.82	-0.5
104,015	+		GFF5473	0.84	-0.4
104,015	+		GFF5473	0.84	-1.0
104,015	+		GFF5473	0.84	-0.3
104,015	+		GFF5473	0.84	+0.1
104,016	-		GFF5473	0.84	-0.1
104,016	-		GFF5473	0.84	-0.7
104,016	-		GFF5473	0.84	-0.3
104,016	-		GFF5473	0.84	-0.3
104,016	-		GFF5473	0.84	+0.3
104,210	+				+0.7
104,210	+				+0.2
104,417	+				-1.1
104,417	+				+0.1
104,417	+				+0.8
104,417	+				+0.7
104,418	-				+0.7
104,418	-				-0.1
104,418	-				-0.9
104,418	-				-0.3
104,418	-				-0.3
104,534	+		GFF5474	0.64	-0.4
104,534	+		GFF5474	0.64	+0.1
104,534	+		GFF5474	0.64	-0.5
104,535	-		GFF5474	0.65	-0.6
104,560	+		GFF5474	0.77	+0.1
104,560	+		GFF5474	0.77	+0.7
104,560	+		GFF5474	0.77	-0.7
104,560	+		GFF5474	0.77	-0.6
104,677	+				+0.9
104,677	+				+1.5
104,678	-				-0.7
104,812	+				+0.9
104,812	+				+1.5
104,812	+				-1.4
104,812	+				+0.7
104,812	+				-0.0
104,813	-				-0.7
104,813	-				+0.1
104,814	-				+0.5
105,184	+		GFF5475	0.32	-0.8
105,184	+		GFF5475	0.32	-0.3
105,184	+		GFF5475	0.32	-0.5
105,185	-		GFF5475	0.32	+2.1
105,185	-		GFF5475	0.32	+1.1