Strain Fitness in Variovorax sp. SCN45 around GFF5443

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
67,214	+		GFF5442	0.37	-0.1
67,214	+		GFF5442	0.37	-1.9
67,215	-		GFF5442	0.38	-0.5
67,224	+		GFF5442	0.38	+0.0
67,224	+		GFF5442	0.38	-1.0
67,224	+		GFF5442	0.38	+0.2
67,224	+		GFF5442	0.38	-0.3
67,224	+		GFF5442	0.38	+0.1
67,224	+		GFF5442	0.38	+0.4
67,224	+		GFF5442	0.38	+1.8
67,224	+		GFF5442	0.38	+0.7
67,224	+		GFF5442	0.38	-1.7
67,224	+		GFF5442	0.38	+0.5
67,225	-		GFF5442	0.38	-0.7
67,225	-		GFF5442	0.38	+0.4
67,225	-		GFF5442	0.38	-0.4
67,225	-		GFF5442	0.38	-0.4
67,225	-		GFF5442	0.38	-0.5
67,225	-		GFF5442	0.38	+0.2
67,225	-		GFF5442	0.38	-0.7
67,371	+		GFF5442	0.51	-0.2
67,371	+		GFF5442	0.51	+0.2
67,371	+		GFF5442	0.51	-0.3
67,372	-		GFF5442	0.51	-0.7
67,372	-		GFF5442	0.51	-0.5
67,485	+		GFF5442	0.60	-1.7
67,485	+		GFF5442	0.60	-0.2
67,485	+		GFF5442	0.60	-0.9
67,485	+		GFF5442	0.60	-0.5
67,485	+		GFF5442	0.60	-0.1
67,485	+		GFF5442	0.60	+1.2
67,485	+		GFF5442	0.60	-0.3
67,485	+		GFF5442	0.60	+0.6
67,485	+		GFF5442	0.60	-1.0
67,485	+		GFF5442	0.60	-1.2
67,485	+		GFF5442	0.60	-0.6
67,486	-		GFF5442	0.60	-1.3
67,486	-		GFF5442	0.60	-1.3
67,486	-		GFF5442	0.60	-0.2
67,486	-		GFF5442	0.60	-0.2
67,486	-		GFF5442	0.60	-0.1
67,486	-		GFF5442	0.60	+1.1
67,486	-		GFF5442	0.60	-0.6
67,581	+		GFF5442	0.68	+1.2
67,581	+		GFF5442	0.68	+1.5
67,581	+		GFF5442	0.68	-0.1
67,581	+		GFF5442	0.68	+1.6
67,581	+		GFF5442	0.68	+0.1
67,581	+		GFF5442	0.68	-0.5
67,581	+		GFF5442	0.68	-0.9
67,581	+		GFF5442	0.68	-0.2
67,581	+		GFF5442	0.68	+0.4
67,581	+		GFF5442	0.68	-0.0
67,581	+		GFF5442	0.68	+0.4
67,581	+		GFF5442	0.68	+0.2
67,581	+		GFF5442	0.68	+0.3
67,581	+		GFF5442	0.68	-0.5
67,581	+		GFF5442	0.68	-0.7
67,582	-		GFF5442	0.69	-0.6
67,582	-		GFF5442	0.69	-0.5
67,582	-		GFF5442	0.69	-0.5
67,582	-		GFF5442	0.69	+0.9
67,582	-		GFF5442	0.69	-0.1
67,582	-		GFF5442	0.69	-1.5
67,582	-		GFF5442	0.69	-1.0
67,582	-		GFF5442	0.69	+1.2
67,582	-		GFF5442	0.69	+0.7
67,582	-		GFF5442	0.69	-2.2
67,582	-		GFF5442	0.69	+0.1
67,582	-		GFF5442	0.69	-0.2
67,623	+		GFF5442	0.72	+0.4
67,623	+		GFF5442	0.72	-0.1
67,623	+		GFF5442	0.72	-1.3
67,623	+		GFF5442	0.72	+0.7
67,623	+		GFF5442	0.72	-0.5
67,623	+		GFF5442	0.72	+0.1
67,623	+		GFF5442	0.72	+0.3
67,623	+		GFF5442	0.72	-0.5
67,623	+		GFF5442	0.72	-0.6
67,623	+		GFF5442	0.72	+1.5
67,623	+		GFF5442	0.72	+0.7
67,623	+		GFF5442	0.72	-0.3
67,623	+		GFF5442	0.72	-1.2
67,623	+		GFF5442	0.72	-0.4
67,623	+		GFF5442	0.72	-1.3
67,623	+		GFF5442	0.72	-0.9
67,623	+		GFF5442	0.72	-2.9
67,623	+		GFF5442	0.72	-0.3
67,623	+		GFF5442	0.72	-0.6
67,623	+		GFF5442	0.72	-0.4
67,623	+		GFF5442	0.72	-0.3
67,623	+		GFF5442	0.72	+1.1
67,623	+		GFF5442	0.72	-0.7
67,623	+		GFF5442	0.72	-1.6
67,623	+		GFF5442	0.72	+1.3
67,623	+		GFF5442	0.72	+0.1
67,623	+		GFF5442	0.72	-0.6
67,623	+		GFF5442	0.72	-0.5
67,623	+		GFF5442	0.72	-1.7
67,623	+		GFF5442	0.72	-0.1
67,624	-		GFF5442	0.72	+0.0
67,624	-		GFF5442	0.72	+1.1
67,624	-		GFF5442	0.72	-0.7
67,624	-		GFF5442	0.72	-0.1
67,624	-		GFF5442	0.72	-0.1
67,624	-		GFF5442	0.72	-0.8
67,624	-		GFF5442	0.72	-0.4
67,624	-		GFF5442	0.72	-0.5
67,624	-		GFF5442	0.72	-1.6
67,624	-		GFF5442	0.72	+0.0
67,624	-		GFF5442	0.72	-1.4
67,624	-		GFF5442	0.72	+0.2
67,624	-		GFF5442	0.72	-0.9
67,624	-		GFF5442	0.72	-0.3
67,624	-		GFF5442	0.72	-0.8
67,624	-		GFF5442	0.72	-0.5
67,624	-		GFF5442	0.72	+0.3
67,624	-		GFF5442	0.72	+1.1
67,624	-		GFF5442	0.72	-0.2
67,624	-		GFF5442	0.72	-0.5
67,624	-		GFF5442	0.72	-0.7
67,624	-		GFF5442	0.72	-0.6
67,624	-		GFF5442	0.72	+0.1
67,624	-		GFF5442	0.72	-0.6
67,624	-		GFF5442	0.72	-0.5
67,624	-		GFF5442	0.72	-0.6
67,624	-		GFF5442	0.72	-0.1
67,624	-		GFF5442	0.72	-0.3
67,624	-		GFF5442	0.72	-0.7
67,624	-		GFF5442	0.72	-0.7
67,624	-		GFF5442	0.72	-0.8
67,624	-		GFF5442	0.72	+1.1
67,624	-		GFF5442	0.72	-1.1
67,624	-		GFF5442	0.72	-0.6
67,624	-		GFF5442	0.72	+0.3
67,624	-		GFF5442	0.72	-0.4
67,624	-		GFF5442	0.72	-0.6
67,624	-		GFF5442	0.72	+0.1
67,632	+		GFF5442	0.73	+0.4
67,632	+		GFF5442	0.73	-0.6
67,632	+		GFF5442	0.73	+0.5
67,632	+		GFF5442	0.73	+0.5
67,632	+		GFF5442	0.73	-0.5
67,632	+		GFF5442	0.73	-0.4
67,633	-		GFF5442	0.73	+0.5
67,633	-		GFF5442	0.73	-0.8
67,677	+		GFF5442	0.77	-0.1
67,677	+		GFF5442	0.77	+0.8
67,732	-		GFF5442	0.81	+0.3
67,732	-		GFF5442	0.81	+0.1
67,752	+		GFF5442	0.83	+0.3
67,752	+		GFF5442	0.83	-0.3
67,752	+		GFF5442	0.83	-0.9
67,752	+		GFF5442	0.83	-0.2
67,752	+		GFF5442	0.83	-0.1
67,753	-		GFF5442	0.83	-0.1
67,753	-		GFF5442	0.83	-1.4
67,753	-		GFF5442	0.83	-0.6
67,980	+				+1.1
67,980	+				-1.0
67,981	-				-1.2
67,981	-				-0.0
68,506	+		GFF5443	0.19	+0.9
68,506	+		GFF5443	0.19	+0.1
68,506	+		GFF5443	0.19	+0.1
68,507	-		GFF5443	0.19	-0.8
68,507	-		GFF5443	0.19	+0.1
68,507	-		GFF5443	0.19	-0.5
68,507	-		GFF5443	0.19	-2.0
68,515	+		GFF5443	0.20	-1.2
68,516	-		GFF5443	0.20	-0.1
68,516	-		GFF5443	0.20	-0.3
68,635	+		GFF5443	0.24	-2.3
68,635	+		GFF5443	0.24	-0.4
68,635	+		GFF5443	0.24	-0.7
68,635	+		GFF5443	0.24	-0.3
68,635	+		GFF5443	0.24	-1.5
68,635	+		GFF5443	0.24	-1.1
68,635	+		GFF5443	0.24	-0.8
68,636	-		GFF5443	0.24	+2.6
68,636	-		GFF5443	0.24	-0.7
68,636	-		GFF5443	0.24	+1.7
68,636	-		GFF5443	0.24	-0.8
68,636	-		GFF5443	0.24	-1.8
68,644	+		GFF5443	0.24	+0.7
68,644	+		GFF5443	0.24	-0.5
68,644	+		GFF5443	0.24	-2.0
68,644	+		GFF5443	0.24	+1.1
68,644	+		GFF5443	0.24	-1.2
68,644	+		GFF5443	0.24	+0.1
68,644	+		GFF5443	0.24	-0.3
68,644	+		GFF5443	0.24	+0.5
68,644	+		GFF5443	0.24	-0.8
68,644	+		GFF5443	0.24	-1.0
68,644	+		GFF5443	0.24	-2.7
68,644	+		GFF5443	0.24	-2.8
68,644	+		GFF5443	0.24	-0.6
68,644	+		GFF5443	0.24	-1.4
68,645	-		GFF5443	0.25	-0.1
68,645	-		GFF5443	0.25	-0.5
68,645	-		GFF5443	0.25	-0.4
68,645	-		GFF5443	0.25	-2.4
68,645	-		GFF5443	0.25	+0.2
68,645	-		GFF5443	0.25	-0.2
68,645	-		GFF5443	0.25	+0.5
68,677	+		GFF5443	0.26	-1.3
68,678	-		GFF5443	0.26	-0.1
68,708	-		GFF5443	0.27	-1.3
68,737	+		GFF5443	0.28	+1.1
68,738	-		GFF5443	0.28	-0.3
69,082	+		GFF5443	0.40	-0.7
69,082	+		GFF5443	0.40	-0.8
69,117	+		GFF5443	0.42	+0.3
69,117	+		GFF5443	0.42	-1.5
69,117	+		GFF5443	0.42	-1.1
69,117	+		GFF5443	0.42	-0.3
69,117	+		GFF5443	0.42	-0.2
69,117	+		GFF5443	0.42	-1.1
69,117	+		GFF5443	0.42	+0.1
69,117	+		GFF5443	0.42	-1.8
69,118	-		GFF5443	0.42	-0.4
69,118	-		GFF5443	0.42	+0.1
69,118	-		GFF5443	0.42	+2.1
69,163	+		GFF5443	0.43	-1.1
69,163	+		GFF5443	0.43	-1.4
69,163	+		GFF5443	0.43	-0.2
69,163	+		GFF5443	0.43	-0.4
69,163	+		GFF5443	0.43	+0.3
69,163	+		GFF5443	0.43	-1.5
69,163	+		GFF5443	0.43	+0.2
69,163	+		GFF5443	0.43	-1.7
69,163	+		GFF5443	0.43	-1.0
69,163	+		GFF5443	0.43	-1.8
69,163	+		GFF5443	0.43	-0.9
69,163	+		GFF5443	0.43	+0.1
69,163	+		GFF5443	0.43	-2.9
69,164	-		GFF5443	0.43	-0.5
69,164	-		GFF5443	0.43	-1.0
69,164	-		GFF5443	0.43	-0.3
69,164	-		GFF5443	0.43	-0.7
69,164	-		GFF5443	0.43	-0.3
69,164	-		GFF5443	0.43	-0.6
69,164	-		GFF5443	0.43	+0.7
69,541	+		GFF5443	0.57	-0.2
69,542	-		GFF5443	0.57	-1.4
69,616	+		GFF5443	0.60	-0.0
69,616	+		GFF5443	0.60	-0.6
69,616	+		GFF5443	0.60	-0.4
69,617	-		GFF5443	0.60	+0.1
69,652	+		GFF5443	0.61	-1.2
69,653	-		GFF5443	0.61	+0.5
69,653	-		GFF5443	0.61	-1.1
69,668	+		GFF5443	0.62	-1.6
69,669	-		GFF5443	0.62	-1.3
69,919	+		GFF5443	0.71	-0.2
69,919	+		GFF5443	0.71	-1.4
69,919	+		GFF5443	0.71	+0.4
69,919	+		GFF5443	0.71	-1.7
69,919	+		GFF5443	0.71	+0.5
69,919	+		GFF5443	0.71	-0.8
69,920	-		GFF5443	0.71	+0.8
69,920	-		GFF5443	0.71	+0.5
69,920	-		GFF5443	0.71	-1.1
69,920	-		GFF5443	0.71	-1.2
69,920	-		GFF5443	0.71	+0.7
69,928	+		GFF5443	0.71	+0.1
70,063	+		GFF5443	0.76	-0.9
70,063	+		GFF5443	0.76	-1.0
70,064	-		GFF5443	0.76	-0.9
70,064	-		GFF5443	0.76	-0.9
70,064	-		GFF5443	0.76	-1.5
70,064	-		GFF5443	0.76	-0.3
70,177	+		GFF5443	0.80	-2.1
70,177	+		GFF5443	0.80	+0.5
70,177	+		GFF5443	0.80	-0.7
70,177	+		GFF5443	0.80	-0.2
70,177	+		GFF5443	0.80	-0.9
70,177	+		GFF5443	0.80	+1.1
70,177	+		GFF5443	0.80	+0.6
70,177	+		GFF5443	0.80	-0.4
70,177	+		GFF5443	0.80	-0.7
70,177	+		GFF5443	0.80	-1.1
70,177	+		GFF5443	0.80	-0.2
70,177	+		GFF5443	0.80	-0.2
70,177	+		GFF5443	0.80	+0.8
70,177	+		GFF5443	0.80	+0.1
70,177	+		GFF5443	0.80	-0.2
70,177	+		GFF5443	0.80	-0.3
70,177	+		GFF5443	0.80	-0.1
70,177	+		GFF5443	0.80	+0.1
70,177	+		GFF5443	0.80	+0.5
70,177	+		GFF5443	0.80	-0.0
70,177	+		GFF5443	0.80	-0.9
70,178	-		GFF5443	0.80	-1.1
70,178	-		GFF5443	0.80	-0.9
70,178	-		GFF5443	0.80	-0.1
70,178	-		GFF5443	0.80	-0.3
70,178	-		GFF5443	0.80	-2.7
70,178	-		GFF5443	0.80	-0.6
70,178	-		GFF5443	0.80	+4.5
70,178	-		GFF5443	0.80	-0.0
70,178	-		GFF5443	0.80	-0.8
70,178	-		GFF5443	0.80	-0.7
70,204	+		GFF5443	0.81	+0.5
70,204	+		GFF5443	0.81	+0.5
70,204	+		GFF5443	0.81	-0.4
70,204	+		GFF5443	0.81	+0.2
70,204	+		GFF5443	0.81	-0.3
70,205	-		GFF5443	0.81	+0.2
70,205	-		GFF5443	0.81	-1.6
70,205	-		GFF5443	0.81	-0.9
70,205	-		GFF5443	0.81	-0.4
70,267	+		GFF5443	0.83	+1.0
70,267	+		GFF5443	0.83	-0.3
70,267	+		GFF5443	0.83	-0.5
70,268	-		GFF5443	0.83	+0.2
70,268	-		GFF5443	0.83	-0.7
70,268	-		GFF5443	0.83	+0.7
70,273	+		GFF5443	0.84	-1.4
70,273	+		GFF5443	0.84	+0.1
70,273	+		GFF5443	0.84	+0.2
70,273	+		GFF5443	0.84	-1.1
70,273	+		GFF5443	0.84	-0.8
70,273	+		GFF5443	0.84	-0.6
70,273	+		GFF5443	0.84	-0.5
70,273	+		GFF5443	0.84	-0.7
70,273	+		GFF5443	0.84	-0.8
70,273	+		GFF5443	0.84	+0.0
70,274	-		GFF5443	0.84	+1.5
70,274	-		GFF5443	0.84	-0.4
70,274	-		GFF5443	0.84	-0.5
70,274	-		GFF5443	0.84	-0.5
70,274	-		GFF5443	0.84	-0.2
70,274	-		GFF5443	0.84	-0.9
70,274	-		GFF5443	0.84	-2.1
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	-0.0
70,274	-		GFF5443	0.84	-0.6
70,274	-		GFF5443	0.84	+0.1
70,274	-		GFF5443	0.84	-2.1
70,274	-		GFF5443	0.84	+0.0
70,274	-		GFF5443	0.84	+1.6
70,274	-		GFF5443	0.84	+1.1
70,500	+				-0.1
70,500	+				-1.6
70,500	+				-1.2
70,500	+				+0.1
70,500	+				-0.9
70,500	+				-1.0
70,501	-				-0.6
70,501	-				-0.9
70,501	-				-0.5
70,501	-				+0.1
70,501	-				+1.1
70,501	-				-0.5
70,501	-				-0.6
70,579	+				-1.3
70,579	+				-0.4
70,579	+				-0.1
70,579	+				+0.2
70,579	+				+0.1
70,579	+				+1.1
70,580	-				+1.3
70,580	-				+0.8
70,580	-				+2.1
70,580	-				+0.0
70,580	-				-0.9
70,580	-				+0.1
70,580	-				-0.5
70,580	-				-0.5
70,580	-				+0.7
70,642	+				-1.4
70,642	+				-0.3
70,642	+				-1.4
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