Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5387 and GFF5388 are separated by 37 nucleotides GFF5388 and GFF5389 are separated by 66 nucleotides GFF5389 and GFF5390 are separated by 145 nucleotides
GFF5387 - Two-component system histidine kinase BP2548, at 13,727 to 15,169
GFF5387
GFF5388 - Two-component response regulatory protein BP2547, at 15,207 to 15,881
GFF5388
GFF5389 - Transcriptional regulator, MarR family, at 15,948 to 16,433
GFF5389
GFF5390 - RecA protein, at 16,579 to 17,685
GFF5390
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.233 kb on - strand at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.949 kb on + strand at 15.950 kb on - strand at 15.950 kb on - strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.981 kb on + strand at 15.981 kb on + strand at 16.439 kb on + strand at 16.440 kb on - strand at 16.474 kb on - strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.493 kb on + strand at 16.494 kb on - strand at 16.494 kb on - strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.498 kb on + strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.499 kb on - strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.561 kb on + strand at 16.562 kb on - strand at 16.562 kb on - strand at 16.562 kb on - strand at 16.807 kb on + strand, within GFF5390 at 16.807 kb on + strand, within GFF5390 at 16.808 kb on - strand, within GFF5390 at 16.808 kb on - strand, within GFF5390 at 16.808 kb on - strand, within GFF5390
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,901 + GFF5387 0.81 -0.5 14,901 + GFF5387 0.81 -0.8 14,901 + GFF5387 0.81 -1.5 14,901 + GFF5387 0.81 -0.4 14,901 + GFF5387 0.81 -0.7 14,901 + GFF5387 0.81 -0.5 14,901 + GFF5387 0.81 -0.7 14,902 - GFF5387 0.81 -0.1 14,902 - GFF5387 0.81 -0.0 14,902 - GFF5387 0.81 -0.3 14,904 + GFF5387 0.82 -1.0 14,904 + GFF5387 0.82 -1.0 14,904 + GFF5387 0.82 +0.2 14,904 + GFF5387 0.82 -0.3 14,904 + GFF5387 0.82 -0.5 14,904 + GFF5387 0.82 -0.1 14,904 + GFF5387 0.82 -0.9 14,904 + GFF5387 0.82 -0.4 14,905 - GFF5387 0.82 +1.6 14,905 - GFF5387 0.82 -0.0 14,905 - GFF5387 0.82 +0.9 14,905 - GFF5387 0.82 -0.7 14,905 - GFF5387 0.82 +0.5 14,905 - GFF5387 0.82 -1.0 14,905 - GFF5387 0.82 +0.5 14,905 - GFF5387 0.82 +0.2 14,905 - GFF5387 0.82 +0.3 14,905 - GFF5387 0.82 -1.2 14,968 + GFF5387 0.86 -0.2 14,968 + GFF5387 0.86 +0.1 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 -0.1 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 -0.7 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 +1.5 14,969 - GFF5387 0.86 +0.0 14,969 - GFF5387 0.86 -0.1 14,969 - GFF5387 0.86 -0.1 14,969 - GFF5387 0.86 -0.8 14,969 - GFF5387 0.86 +0.1 14,969 - GFF5387 0.86 +0.2 14,969 - GFF5387 0.86 +0.0 14,969 - GFF5387 0.86 +0.3 14,969 - GFF5387 0.86 -0.8 15,232 + +1.1 15,232 + +1.1 15,232 + -0.0 15,232 + -0.3 15,233 - -0.1 15,301 + GFF5388 0.14 -1.4 15,301 + GFF5388 0.14 -0.7 15,301 + GFF5388 0.14 -0.3 15,301 + GFF5388 0.14 +0.6 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 -1.3 15,301 + GFF5388 0.14 -0.1 15,301 + GFF5388 0.14 -0.5 15,301 + GFF5388 0.14 +1.1 15,301 + GFF5388 0.14 -2.1 15,301 + GFF5388 0.14 -0.1 15,301 + GFF5388 0.14 +0.6 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 +0.1 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -0.9 15,301 + GFF5388 0.14 -0.3 15,301 + GFF5388 0.14 -1.7 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 +0.4 15,302 - GFF5388 0.14 -0.4 15,302 - GFF5388 0.14 +0.7 15,302 - GFF5388 0.14 +0.5 15,302 - GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -0.8 15,302 - GFF5388 0.14 -0.6 15,302 - GFF5388 0.14 -0.7 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 +0.5 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 -1.0 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -1.7 15,302 - GFF5388 0.14 -0.5 15,302 - GFF5388 0.14 -0.4 15,478 + GFF5388 0.40 -0.4 15,478 + GFF5388 0.40 -0.1 15,478 + GFF5388 0.40 +2.1 15,478 + GFF5388 0.40 +0.4 15,479 - GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 +1.3 15,479 - GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 -0.5 15,586 + GFF5388 0.56 +0.7 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 +0.6 15,586 + GFF5388 0.56 +0.8 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 +1.1 15,586 + GFF5388 0.56 -1.2 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 -0.9 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -0.4 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 +0.2 15,586 + GFF5388 0.56 +0.0 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 +0.0 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 -0.8 15,587 - GFF5388 0.56 +0.7 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 +1.0 15,587 - GFF5388 0.56 -1.1 15,587 - GFF5388 0.56 +1.6 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.0 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 -0.6 15,949 + +1.1 15,950 - -0.0 15,950 - -0.2 15,959 + -0.6 15,959 + -2.1 15,959 + -0.8 15,959 + +0.9 15,959 + -0.1 15,959 + +0.3 15,959 + -0.2 15,959 + -0.3 15,959 + -0.0 15,959 + -0.1 15,959 + -0.7 15,959 + -0.4 15,960 - +0.4 15,960 - -1.0 15,960 - +0.1 15,960 - -0.6 15,960 - -0.3 15,960 - -0.4 15,961 + -0.1 15,961 + +0.4 15,961 + -0.5 15,961 + +0.4 15,961 + -0.8 15,961 + +1.1 15,961 + +0.2 15,961 + -0.5 15,961 + +0.4 15,961 + -1.3 15,961 + -0.0 15,961 + +0.6 15,961 + -1.2 15,961 + +1.0 15,962 - -0.1 15,962 - +0.1 15,962 - -0.7 15,962 - +1.1 15,962 - +0.3 15,962 - +1.1 15,962 - +0.1 15,962 - -1.1 15,962 - -0.1 15,962 - +0.3 15,981 + -0.5 15,981 + +0.3 16,439 + -0.9 16,440 - +0.5 16,474 - -0.4 16,493 + +0.3 16,493 + -0.6 16,493 + -0.3 16,493 + -0.6 16,494 - +0.2 16,494 - -1.0 16,498 + +1.1 16,498 + -0.1 16,498 + -1.0 16,498 + -0.4 16,499 - -0.3 16,499 - -0.5 16,499 - -0.2 16,499 - -0.1 16,499 - -0.1 16,499 - +0.2 16,561 + +0.6 16,561 + -0.7 16,561 + -0.4 16,561 + -0.2 16,561 + +0.5 16,561 + -0.2 16,561 + -0.2 16,562 - +0.1 16,562 - -0.6 16,562 - -0.6 16,807 + GFF5390 0.21 +1.1 16,807 + GFF5390 0.21 -1.0 16,808 - GFF5390 0.21 -0.7 16,808 - GFF5390 0.21 -1.3 16,808 - GFF5390 0.21 +0.2
Or see this region's nucleotide sequence