Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5385 and GFF5386 are separated by 13 nucleotides GFF5386 and GFF5387 are separated by 6 nucleotides GFF5387 and GFF5388 are separated by 37 nucleotides GFF5388 and GFF5389 are separated by 66 nucleotides
GFF5385 - Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15), at 12,646 to 13,458
GFF5385
GFF5386 - hypothetical protein, at 13,472 to 13,720
GFF5386
GFF5387 - Two-component system histidine kinase BP2548, at 13,727 to 15,169
GFF5387
GFF5388 - Two-component response regulatory protein BP2547, at 15,207 to 15,881
GFF5388
GFF5389 - Transcriptional regulator, MarR family, at 15,948 to 16,433
GFF5389
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.520 kb on + strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.521 kb on - strand, within GFF5386 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.893 kb on + strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 13.894 kb on - strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.037 kb on + strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.038 kb on - strand, within GFF5387 at 14.136 kb on + strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.137 kb on - strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.901 kb on + strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.902 kb on - strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.904 kb on + strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.905 kb on - strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.968 kb on + strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 14.969 kb on - strand, within GFF5387 at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.232 kb on + strand at 15.233 kb on - strand at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.301 kb on + strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.302 kb on - strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.478 kb on + strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.479 kb on - strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.586 kb on + strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.587 kb on - strand, within GFF5388 at 15.949 kb on + strand at 15.950 kb on - strand at 15.950 kb on - strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.959 kb on + strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.960 kb on - strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.961 kb on + strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.962 kb on - strand at 15.981 kb on + strand at 15.981 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,520 + GFF5386 0.19 +1.0 13,521 - GFF5386 0.20 +0.3 13,521 - GFF5386 0.20 +1.8 13,893 + GFF5387 0.12 -1.3 13,893 + GFF5387 0.12 -0.6 13,893 + GFF5387 0.12 -0.9 13,893 + GFF5387 0.12 -0.4 13,894 - GFF5387 0.12 -1.7 13,894 - GFF5387 0.12 -0.7 14,037 + GFF5387 0.21 +1.2 14,037 + GFF5387 0.21 -0.1 14,037 + GFF5387 0.21 -0.1 14,037 + GFF5387 0.21 -0.5 14,037 + GFF5387 0.21 -0.6 14,037 + GFF5387 0.21 -0.5 14,038 - GFF5387 0.22 -0.5 14,038 - GFF5387 0.22 +0.2 14,038 - GFF5387 0.22 +1.2 14,038 - GFF5387 0.22 -1.1 14,038 - GFF5387 0.22 -0.2 14,038 - GFF5387 0.22 -0.5 14,038 - GFF5387 0.22 -1.0 14,038 - GFF5387 0.22 -0.7 14,038 - GFF5387 0.22 +0.3 14,136 + GFF5387 0.28 +0.4 14,137 - GFF5387 0.28 +0.5 14,137 - GFF5387 0.28 -1.8 14,137 - GFF5387 0.28 +0.3 14,901 + GFF5387 0.81 -0.5 14,901 + GFF5387 0.81 -0.8 14,901 + GFF5387 0.81 -1.5 14,901 + GFF5387 0.81 -0.4 14,901 + GFF5387 0.81 -0.7 14,901 + GFF5387 0.81 -0.5 14,901 + GFF5387 0.81 -0.7 14,902 - GFF5387 0.81 -0.1 14,902 - GFF5387 0.81 -0.0 14,902 - GFF5387 0.81 -0.3 14,904 + GFF5387 0.82 -1.0 14,904 + GFF5387 0.82 -1.0 14,904 + GFF5387 0.82 +0.2 14,904 + GFF5387 0.82 -0.3 14,904 + GFF5387 0.82 -0.5 14,904 + GFF5387 0.82 -0.1 14,904 + GFF5387 0.82 -0.9 14,904 + GFF5387 0.82 -0.4 14,905 - GFF5387 0.82 +1.6 14,905 - GFF5387 0.82 -0.0 14,905 - GFF5387 0.82 +0.9 14,905 - GFF5387 0.82 -0.7 14,905 - GFF5387 0.82 +0.5 14,905 - GFF5387 0.82 -1.0 14,905 - GFF5387 0.82 +0.5 14,905 - GFF5387 0.82 +0.2 14,905 - GFF5387 0.82 +0.3 14,905 - GFF5387 0.82 -1.2 14,968 + GFF5387 0.86 -0.2 14,968 + GFF5387 0.86 +0.1 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 -0.1 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 -0.7 14,968 + GFF5387 0.86 -0.3 14,968 + GFF5387 0.86 +1.5 14,969 - GFF5387 0.86 +0.0 14,969 - GFF5387 0.86 -0.1 14,969 - GFF5387 0.86 -0.1 14,969 - GFF5387 0.86 -0.8 14,969 - GFF5387 0.86 +0.1 14,969 - GFF5387 0.86 +0.2 14,969 - GFF5387 0.86 +0.0 14,969 - GFF5387 0.86 +0.3 14,969 - GFF5387 0.86 -0.8 15,232 + +1.1 15,232 + +1.1 15,232 + -0.0 15,232 + -0.3 15,233 - -0.1 15,301 + GFF5388 0.14 -1.4 15,301 + GFF5388 0.14 -0.7 15,301 + GFF5388 0.14 -0.3 15,301 + GFF5388 0.14 +0.6 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 +0.2 15,301 + GFF5388 0.14 -1.3 15,301 + GFF5388 0.14 -0.1 15,301 + GFF5388 0.14 -0.5 15,301 + GFF5388 0.14 +1.1 15,301 + GFF5388 0.14 -2.1 15,301 + GFF5388 0.14 -0.1 15,301 + GFF5388 0.14 +0.6 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 +0.1 15,301 + GFF5388 0.14 -0.6 15,301 + GFF5388 0.14 -0.9 15,301 + GFF5388 0.14 -0.3 15,301 + GFF5388 0.14 -1.7 15,301 + GFF5388 0.14 -0.4 15,301 + GFF5388 0.14 +0.4 15,302 - GFF5388 0.14 -0.4 15,302 - GFF5388 0.14 +0.7 15,302 - GFF5388 0.14 +0.5 15,302 - GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -0.8 15,302 - GFF5388 0.14 -0.6 15,302 - GFF5388 0.14 -0.7 15,302 - GFF5388 0.14 +0.1 15,302 - GFF5388 0.14 +0.5 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -0.1 15,302 - GFF5388 0.14 -1.0 15,302 - GFF5388 0.14 -0.2 15,302 - GFF5388 0.14 -1.7 15,302 - GFF5388 0.14 -0.5 15,302 - GFF5388 0.14 -0.4 15,478 + GFF5388 0.40 -0.4 15,478 + GFF5388 0.40 -0.1 15,478 + GFF5388 0.40 +2.1 15,478 + GFF5388 0.40 +0.4 15,479 - GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 +1.3 15,479 - GFF5388 0.40 -0.3 15,479 - GFF5388 0.40 -0.5 15,586 + GFF5388 0.56 +0.7 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 +0.6 15,586 + GFF5388 0.56 +0.8 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 -0.5 15,586 + GFF5388 0.56 +1.1 15,586 + GFF5388 0.56 -1.2 15,586 + GFF5388 0.56 -0.2 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 +0.5 15,586 + GFF5388 0.56 -0.9 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -0.4 15,586 + GFF5388 0.56 -0.1 15,586 + GFF5388 0.56 -0.6 15,586 + GFF5388 0.56 +0.2 15,586 + GFF5388 0.56 +0.0 15,586 + GFF5388 0.56 +0.1 15,586 + GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 +0.0 15,587 - GFF5388 0.56 -0.3 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.2 15,587 - GFF5388 0.56 -0.8 15,587 - GFF5388 0.56 +0.7 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 +1.1 15,587 - GFF5388 0.56 +1.0 15,587 - GFF5388 0.56 -1.1 15,587 - GFF5388 0.56 +1.6 15,587 - GFF5388 0.56 -0.1 15,587 - GFF5388 0.56 -0.0 15,587 - GFF5388 0.56 -0.9 15,587 - GFF5388 0.56 -0.6 15,949 + +1.1 15,950 - -0.0 15,950 - -0.2 15,959 + -0.6 15,959 + -2.1 15,959 + -0.8 15,959 + +0.9 15,959 + -0.1 15,959 + +0.3 15,959 + -0.2 15,959 + -0.3 15,959 + -0.0 15,959 + -0.1 15,959 + -0.7 15,959 + -0.4 15,960 - +0.4 15,960 - -1.0 15,960 - +0.1 15,960 - -0.6 15,960 - -0.3 15,960 - -0.4 15,961 + -0.1 15,961 + +0.4 15,961 + -0.5 15,961 + +0.4 15,961 + -0.8 15,961 + +1.1 15,961 + +0.2 15,961 + -0.5 15,961 + +0.4 15,961 + -1.3 15,961 + -0.0 15,961 + +0.6 15,961 + -1.2 15,961 + +1.0 15,962 - -0.1 15,962 - +0.1 15,962 - -0.7 15,962 - +1.1 15,962 - +0.3 15,962 - +1.1 15,962 - +0.1 15,962 - -1.1 15,962 - -0.1 15,962 - +0.3 15,981 + -0.5 15,981 + +0.3
Or see this region's nucleotide sequence