Strain Fitness in Variovorax sp. SCN45 around GFF5381

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
6,007	+		GFF5380	0.10	-0.4
6,007	+		GFF5380	0.10	+2.1
6,008	-		GFF5380	0.10	+0.1
6,152	-		GFF5380	0.25	-0.6
6,166	+		GFF5380	0.27	+0.8
6,166	+		GFF5380	0.27	+0.7
6,166	+		GFF5380	0.27	-0.6
6,166	+		GFF5380	0.27	-0.5
6,166	+		GFF5380	0.27	-0.2
6,167	-		GFF5380	0.27	+0.2
6,167	-		GFF5380	0.27	-0.3
6,167	-		GFF5380	0.27	-0.9
6,167	-		GFF5380	0.27	-0.2
6,167	-		GFF5380	0.27	+0.3
6,167	-		GFF5380	0.27	-0.2
6,167	-		GFF5380	0.27	+0.1
6,167	-		GFF5380	0.27	+1.1
6,167	-		GFF5380	0.27	+0.6
6,167	-		GFF5380	0.27	+0.6
6,167	-		GFF5380	0.27	+1.5
6,167	-		GFF5380	0.27	+0.4
6,167	-		GFF5380	0.27	+0.7
6,167	-		GFF5380	0.27	+0.1
6,167	-		GFF5380	0.27	+0.2
6,167	-		GFF5380	0.27	+0.9
6,167	-		GFF5380	0.27	+1.9
6,274	+		GFF5380	0.38	-0.3
6,274	+		GFF5380	0.38	+0.1
6,274	+		GFF5380	0.38	-0.3
6,274	+		GFF5380	0.38	+0.6
6,275	-		GFF5380	0.38	+0.7
6,275	-		GFF5380	0.38	+0.3
6,275	-		GFF5380	0.38	-0.1
6,275	-		GFF5380	0.38	-0.3
6,275	-		GFF5380	0.38	+0.7
6,329	-		GFF5380	0.44	-0.5
6,415	+		GFF5380	0.53	-0.5
6,415	+		GFF5380	0.53	-0.2
6,415	+		GFF5380	0.53	+0.5
6,416	-		GFF5380	0.53	-1.1
6,416	-		GFF5380	0.53	+0.2
6,416	-		GFF5380	0.53	+0.6
6,416	-		GFF5380	0.53	+0.5
6,416	-		GFF5380	0.53	-0.6
6,445	+		GFF5380	0.56	+0.3
6,445	+		GFF5380	0.56	-0.3
6,445	+		GFF5380	0.56	-0.5
6,445	+		GFF5380	0.56	+2.6
6,445	+		GFF5380	0.56	+1.3
6,445	+		GFF5380	0.56	-1.0
6,446	-		GFF5380	0.56	-0.5
6,446	-		GFF5380	0.56	+1.5
6,446	-		GFF5380	0.56	+0.7
6,446	-		GFF5380	0.56	-0.4
6,446	-		GFF5380	0.56	+0.8
6,446	-		GFF5380	0.56	-0.5
6,446	-		GFF5380	0.56	+0.3
6,446	-		GFF5380	0.56	-0.5
6,446	-		GFF5380	0.56	-0.7
6,556	+		GFF5380	0.67	+0.2
6,556	+		GFF5380	0.67	-0.5
6,557	-		GFF5380	0.67	-0.5
6,557	-		GFF5380	0.67	+0.1
6,557	-		GFF5380	0.67	-1.8
6,571	+		GFF5380	0.69	+0.8
6,572	-		GFF5380	0.69	-0.6
6,814	-				-1.4
6,827	+				-0.1
6,827	+				+0.1
6,827	+				+0.1
6,828	-				-0.8
6,923	+				-0.7
6,933	+				-1.0
6,933	+				-0.5
6,934	-				-1.1
6,934	-				-0.3
6,934	-				-1.1
6,935	+				-1.4
6,936	-				-0.6
6,936	-				+0.4
6,965	+				-1.1
6,966	-				-0.2
6,966	-				+0.4
7,192	-		GFF5381	0.22	-0.5
7,192	-		GFF5381	0.22	-0.2
7,389	+		GFF5381	0.43	-0.6
7,389	+		GFF5381	0.43	-0.7
7,389	+		GFF5381	0.43	+0.7
7,390	-		GFF5381	0.44	+0.0
7,390	-		GFF5381	0.44	+1.2
7,390	-		GFF5381	0.44	+0.5
7,390	-		GFF5381	0.44	+2.6
7,464	+		GFF5381	0.51	-1.3
7,464	+		GFF5381	0.51	-0.3
7,464	+		GFF5381	0.51	-1.2
7,464	+		GFF5381	0.51	-0.1
7,464	+		GFF5381	0.51	+0.1
7,464	+		GFF5381	0.51	-1.4
7,465	-		GFF5381	0.52	-0.9
7,465	-		GFF5381	0.52	+0.1
7,791	+		GFF5381	0.86	-0.8
7,791	+		GFF5381	0.86	-0.2
7,792	-		GFF5381	0.86	-0.6
7,792	-		GFF5381	0.86	+0.6
7,940	+				-0.8
7,940	+				-0.2
7,940	+				-1.3
8,215	+		GFF5382	0.28	-0.9
8,215	+		GFF5382	0.28	-0.1
8,215	+		GFF5382	0.28	-1.2
8,215	+		GFF5382	0.28	-0.0
8,216	-		GFF5382	0.28	-0.6
8,216	-		GFF5382	0.28	-0.5
8,216	-		GFF5382	0.28	+0.5
8,216	-		GFF5382	0.28	-0.1
8,216	-		GFF5382	0.28	-0.4
8,216	-		GFF5382	0.28	+0.4
8,216	-		GFF5382	0.28	-0.5
8,408	+		GFF5382	0.48	-1.3
8,408	+		GFF5382	0.48	-2.8
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.3
8,408	+		GFF5382	0.48	-0.4
8,408	+		GFF5382	0.48	+0.0
8,408	+		GFF5382	0.48	-1.5
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.5
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	-0.9
8,408	+		GFF5382	0.48	-2.0
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	-0.0
8,408	+		GFF5382	0.48	-0.3
8,408	+		GFF5382	0.48	-0.6
8,408	+		GFF5382	0.48	+0.3
8,408	+		GFF5382	0.48	-0.4
8,408	+		GFF5382	0.48	-0.5
8,408	+		GFF5382	0.48	-0.6
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	-1.7
8,408	+		GFF5382	0.48	+0.4
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	+0.6
8,409	-		GFF5382	0.48	-0.5
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	-1.4
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	+0.5
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	-0.7
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	+0.6
8,409	-		GFF5382	0.48	-1.5
8,409	-		GFF5382	0.48	+0.5
8,409	-		GFF5382	0.48	+2.1
8,409	-		GFF5382	0.48	+0.9
8,409	-		GFF5382	0.48	-1.5
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	-0.3
8,409	-		GFF5382	0.48	-0.9
8,456	+		GFF5382	0.52	+0.1
8,456	+		GFF5382	0.52	-0.4
8,456	+		GFF5382	0.52	+0.7
8,456	+		GFF5382	0.52	-0.7
8,456	+		GFF5382	0.52	-1.1
8,456	+		GFF5382	0.52	+0.2
8,456	+		GFF5382	0.52	+0.1
8,456	+		GFF5382	0.52	-0.2
8,456	+		GFF5382	0.52	-0.0
8,456	+		GFF5382	0.52	-0.1
8,456	+		GFF5382	0.52	-0.1
8,456	+		GFF5382	0.52	-0.8
8,457	-		GFF5382	0.52	+0.2
8,457	-		GFF5382	0.52	-0.8
8,457	-		GFF5382	0.52	-0.5
8,457	-		GFF5382	0.52	-0.6
8,457	-		GFF5382	0.52	+0.3
8,457	-		GFF5382	0.52	-2.3
8,457	-		GFF5382	0.52	-0.9
8,457	-		GFF5382	0.52	-0.8
8,457	-		GFF5382	0.52	-1.5
8,457	-		GFF5382	0.52	+0.0
8,457	-		GFF5382	0.52	+0.5
8,457	-		GFF5382	0.52	+0.8
8,457	-		GFF5382	0.52	-1.5
8,457	-		GFF5382	0.52	-0.3
8,609	+		GFF5382	0.68	-0.6
8,609	+		GFF5382	0.68	+0.2
8,609	+		GFF5382	0.68	-0.2
8,610	-		GFF5382	0.68	-0.5
8,658	-		GFF5382	0.73	-1.3
8,658	-		GFF5382	0.73	-2.0
8,823	+		GFF5382	0.90	+1.1
8,823	+		GFF5382	0.90	-0.3
8,823	+		GFF5382	0.90	-0.1
8,824	-		GFF5382	0.90	+0.4
8,824	-		GFF5382	0.90	-2.6
8,824	-		GFF5382	0.90	-0.5
8,912	+				-0.1
8,913	-				-1.0
8,913	-				-1.6
8,913	-				+1.1
8,913	-				+0.4
8,913	-				+1.5
8,913	-				-0.2