Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF530 and GFF531 are separated by 25 nucleotides GFF531 and GFF532 are separated by 132 nucleotides GFF532 and GFF533 are separated by 29 nucleotides GFF533 and GFF534 are separated by 63 nucleotides
GFF530 - no description, at 572,011 to 572,193
GFF530
GFF531 - hypothetical protein, at 572,219 to 572,890
GFF531
GFF532 - no description, at 573,023 to 573,463
GFF532
GFF533 - cytochrome c551/c552, at 573,493 to 573,849
GFF533
GFF534 - Two-component system sensor histidine kinase, at 573,913 to 575,925
GFF534
Position (kb) 573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.101 kb on + strand, within GFF530 at 572.101 kb on + strand, within GFF530 at 572.102 kb on - strand, within GFF530 at 572.102 kb on - strand, within GFF530 at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.180 kb on - strand at 572.180 kb on - strand at 572.204 kb on + strand at 572.204 kb on + strand at 572.205 kb on - strand at 572.205 kb on - strand at 572.205 kb on - strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.315 kb on - strand, within GFF531 at 572.323 kb on - strand, within GFF531 at 572.323 kb on - strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.461 kb on - strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.635 kb on - strand, within GFF531 at 572.635 kb on - strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.746 kb on - strand, within GFF531 at 572.746 kb on - strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.908 kb on + strand at 572.909 kb on - strand at 572.909 kb on - strand at 572.909 kb on - strand at 572.928 kb on + strand at 572.928 kb on + strand at 572.928 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.934 kb on + strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.935 kb on - strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.938 kb on + strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.939 kb on - strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.940 kb on + strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.941 kb on - strand at 572.944 kb on + strand at 572.944 kb on + strand at 572.944 kb on + strand at 572.945 kb on - strand at 572.945 kb on - strand at 572.945 kb on - strand at 573.030 kb on + strand at 573.030 kb on + strand at 573.030 kb on + strand at 573.030 kb on + strand at 573.031 kb on - strand at 573.031 kb on - strand at 573.031 kb on - strand at 573.031 kb on - strand at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.092 kb on + strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.093 kb on - strand, within GFF532 at 573.284 kb on + strand, within GFF532 at 573.284 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.311 kb on + strand, within GFF532 at 573.312 kb on - strand, within GFF532 at 573.312 kb on - strand, within GFF532 at 573.312 kb on - strand, within GFF532 at 573.312 kb on - strand, within GFF532 at 573.312 kb on - strand, within GFF532 at 573.895 kb on + strand at 573.895 kb on + strand at 573.896 kb on - strand at 573.896 kb on - strand at 573.899 kb on - strand at 573.899 kb on - strand at 573.919 kb on + strand at 573.920 kb on - strand at 573.920 kb on - strand at 573.920 kb on - strand at 573.923 kb on + strand at 573.923 kb on + strand at 573.923 kb on + strand at 573.923 kb on + strand at 573.923 kb on + strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 573.924 kb on - strand at 574.342 kb on + strand, within GFF534 at 574.342 kb on + strand, within GFF534 at 574.342 kb on + strand, within GFF534 at 574.382 kb on - strand, within GFF534 at 574.382 kb on - strand, within GFF534 at 574.382 kb on - strand, within GFF534 at 574.382 kb on - strand, within GFF534
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 572,101 + GFF530 0.49 -0.4 572,101 + GFF530 0.49 -0.9 572,102 - GFF530 0.50 -0.2 572,102 - GFF530 0.50 -0.1 572,179 + +1.9 572,179 + -0.3 572,179 + -0.8 572,179 + -1.8 572,179 + +1.4 572,179 + +0.2 572,179 + +0.3 572,179 + +0.3 572,180 - -0.0 572,180 - -0.6 572,204 + -0.7 572,204 + -0.1 572,205 - -0.1 572,205 - +0.1 572,205 - -1.8 572,210 + -0.9 572,210 + -0.4 572,210 + -0.1 572,210 + +0.3 572,210 + -0.3 572,210 + +0.1 572,210 + -0.8 572,210 + +1.5 572,210 + +0.6 572,210 + -0.9 572,211 - +0.1 572,211 - -0.5 572,211 - -0.4 572,211 - -0.7 572,211 - +0.1 572,211 - -0.2 572,211 - +0.4 572,211 - +0.1 572,211 - +0.5 572,211 - -0.8 572,311 + GFF531 0.14 -1.1 572,311 + GFF531 0.14 -1.1 572,311 + GFF531 0.14 +0.1 572,311 + GFF531 0.14 -0.1 572,312 - GFF531 0.14 -1.6 572,312 - GFF531 0.14 -0.5 572,312 - GFF531 0.14 -0.5 572,312 - GFF531 0.14 -0.9 572,313 + GFF531 0.14 -0.5 572,313 + GFF531 0.14 -1.3 572,313 + GFF531 0.14 -0.7 572,313 + GFF531 0.14 -2.2 572,313 + GFF531 0.14 -0.1 572,313 + GFF531 0.14 -1.4 572,313 + GFF531 0.14 -0.9 572,313 + GFF531 0.14 -1.4 572,313 + GFF531 0.14 -1.3 572,313 + GFF531 0.14 -2.1 572,313 + GFF531 0.14 -0.9 572,313 + GFF531 0.14 -0.9 572,314 - GFF531 0.14 -1.5 572,314 - GFF531 0.14 -0.5 572,314 - GFF531 0.14 -0.5 572,314 - GFF531 0.14 -1.3 572,315 - GFF531 0.14 -0.1 572,323 - GFF531 0.15 -0.8 572,323 - GFF531 0.15 +0.9 572,400 + GFF531 0.27 +0.3 572,400 + GFF531 0.27 +0.3 572,400 + GFF531 0.27 -1.5 572,400 + GFF531 0.27 -1.1 572,400 + GFF531 0.27 -1.5 572,400 + GFF531 0.27 -0.6 572,400 + GFF531 0.27 -1.0 572,400 + GFF531 0.27 -1.1 572,400 + GFF531 0.27 -1.5 572,400 + GFF531 0.27 -0.3 572,400 + GFF531 0.27 +0.5 572,400 + GFF531 0.27 -1.5 572,400 + GFF531 0.27 -1.7 572,400 + GFF531 0.27 -0.7 572,400 + GFF531 0.27 +0.9 572,401 - GFF531 0.27 -1.1 572,401 - GFF531 0.27 -1.3 572,401 - GFF531 0.27 -1.8 572,401 - GFF531 0.27 +0.1 572,401 - GFF531 0.27 -0.8 572,401 - GFF531 0.27 -0.3 572,401 - GFF531 0.27 -1.1 572,401 - GFF531 0.27 -0.1 572,401 - GFF531 0.27 +0.3 572,401 - GFF531 0.27 -0.7 572,401 - GFF531 0.27 -1.6 572,401 - GFF531 0.27 -1.8 572,401 - GFF531 0.27 -0.1 572,401 - GFF531 0.27 +1.9 572,401 - GFF531 0.27 -1.1 572,401 - GFF531 0.27 -1.5 572,430 + GFF531 0.31 -1.1 572,430 + GFF531 0.31 -2.3 572,430 + GFF531 0.31 -1.3 572,430 + GFF531 0.31 -1.4 572,430 + GFF531 0.31 -1.3 572,430 + GFF531 0.31 -2.1 572,431 - GFF531 0.32 -1.6 572,431 - GFF531 0.32 -0.1 572,431 - GFF531 0.32 -0.3 572,431 - GFF531 0.32 -1.5 572,461 - GFF531 0.36 -0.8 572,634 + GFF531 0.62 -1.3 572,634 + GFF531 0.62 -1.4 572,634 + GFF531 0.62 -0.7 572,634 + GFF531 0.62 -2.2 572,634 + GFF531 0.62 +0.3 572,635 - GFF531 0.62 -1.4 572,635 - GFF531 0.62 -1.5 572,745 + GFF531 0.78 -1.9 572,745 + GFF531 0.78 -0.3 572,745 + GFF531 0.78 -1.1 572,745 + GFF531 0.78 -0.2 572,746 - GFF531 0.78 +0.6 572,746 - GFF531 0.78 -0.7 572,787 + GFF531 0.85 -2.1 572,787 + GFF531 0.85 -0.9 572,787 + GFF531 0.85 -1.7 572,787 + GFF531 0.85 -0.7 572,787 + GFF531 0.85 -2.0 572,787 + GFF531 0.85 -3.6 572,787 + GFF531 0.85 -1.1 572,787 + GFF531 0.85 -2.8 572,787 + GFF531 0.85 +0.0 572,787 + GFF531 0.85 -0.7 572,787 + GFF531 0.85 -1.6 572,787 + GFF531 0.85 +0.3 572,787 + GFF531 0.85 -0.9 572,787 + GFF531 0.85 -2.3 572,787 + GFF531 0.85 -0.5 572,787 + GFF531 0.85 -0.3 572,787 + GFF531 0.85 -1.6 572,787 + GFF531 0.85 -0.3 572,787 + GFF531 0.85 -0.8 572,787 + GFF531 0.85 -1.6 572,788 - GFF531 0.85 -1.1 572,788 - GFF531 0.85 -2.2 572,788 - GFF531 0.85 -0.6 572,788 - GFF531 0.85 -0.9 572,788 - GFF531 0.85 -0.9 572,788 - GFF531 0.85 +1.9 572,788 - GFF531 0.85 -1.5 572,788 - GFF531 0.85 -0.9 572,788 - GFF531 0.85 -0.5 572,788 - GFF531 0.85 -1.4 572,788 - GFF531 0.85 -1.8 572,788 - GFF531 0.85 -0.5 572,788 - GFF531 0.85 -1.1 572,788 - GFF531 0.85 -2.8 572,788 - GFF531 0.85 +0.1 572,788 - GFF531 0.85 +0.9 572,788 - GFF531 0.85 -1.5 572,788 - GFF531 0.85 +0.3 572,788 - GFF531 0.85 -1.3 572,788 - GFF531 0.85 -1.3 572,908 + -0.9 572,909 - +0.5 572,909 - -1.1 572,909 - -0.7 572,928 + +0.7 572,928 + -1.1 572,928 + -0.1 572,934 + -0.1 572,934 + -1.1 572,934 + +0.1 572,934 + +0.9 572,934 + -0.4 572,934 + -0.3 572,934 + -0.1 572,934 + +0.9 572,935 - -0.9 572,935 - +0.9 572,935 - -0.6 572,935 - -0.4 572,935 - -0.9 572,935 - +0.3 572,935 - +0.6 572,935 - -0.1 572,935 - -0.9 572,935 - +0.5 572,935 - -0.1 572,938 + -2.3 572,938 + -0.4 572,938 + +0.3 572,938 + +0.4 572,938 + -0.6 572,938 + +0.3 572,938 + -1.6 572,938 + -0.5 572,938 + -0.7 572,938 + -0.5 572,938 + -0.4 572,938 + -1.5 572,938 + -1.1 572,938 + -1.4 572,938 + -2.0 572,938 + +0.3 572,939 - -0.7 572,939 - -0.8 572,939 - -0.2 572,939 - -0.1 572,939 - -2.1 572,939 - -0.9 572,939 - -0.2 572,939 - -0.4 572,939 - -0.1 572,939 - -1.1 572,940 + -0.1 572,940 + -0.9 572,940 + +0.1 572,940 + -1.1 572,940 + -0.7 572,940 + +0.1 572,940 + -0.7 572,940 + +0.5 572,941 - +0.1 572,941 - +0.0 572,941 - -0.4 572,941 - -0.3 572,941 - -0.1 572,941 - +0.5 572,941 - +0.1 572,941 - -0.7 572,941 - -0.5 572,941 - +0.7 572,941 - -2.1 572,944 + -0.7 572,944 + +0.9 572,944 + -2.0 572,945 - +0.2 572,945 - -0.1 572,945 - +0.4 573,030 + +1.1 573,030 + -0.9 573,030 + +0.5 573,030 + +0.5 573,031 - +0.1 573,031 - -1.1 573,031 - -0.2 573,031 - -0.2 573,092 + GFF532 0.16 -0.2 573,092 + GFF532 0.16 -0.3 573,092 + GFF532 0.16 -0.6 573,092 + GFF532 0.16 -0.0 573,092 + GFF532 0.16 -0.2 573,092 + GFF532 0.16 +0.5 573,092 + GFF532 0.16 +1.9 573,092 + GFF532 0.16 -1.6 573,092 + GFF532 0.16 -0.5 573,092 + GFF532 0.16 -0.3 573,092 + GFF532 0.16 -1.2 573,093 - GFF532 0.16 +0.3 573,093 - GFF532 0.16 -0.0 573,093 - GFF532 0.16 -1.8 573,093 - GFF532 0.16 -0.1 573,093 - GFF532 0.16 -1.2 573,093 - GFF532 0.16 +0.9 573,093 - GFF532 0.16 -0.9 573,093 - GFF532 0.16 +0.2 573,284 + GFF532 0.59 +0.7 573,284 + GFF532 0.59 -2.7 573,311 + GFF532 0.65 +0.1 573,311 + GFF532 0.65 +0.1 573,311 + GFF532 0.65 -0.7 573,311 + GFF532 0.65 +0.2 573,311 + GFF532 0.65 -0.3 573,311 + GFF532 0.65 -0.2 573,311 + GFF532 0.65 -1.1 573,312 - GFF532 0.66 +1.9 573,312 - GFF532 0.66 -1.0 573,312 - GFF532 0.66 -0.0 573,312 - GFF532 0.66 -1.8 573,312 - GFF532 0.66 +0.3 573,895 + -0.7 573,895 + +0.5 573,896 - +2.6 573,896 - -2.4 573,899 - -1.0 573,899 - +0.9 573,919 + -0.9 573,920 - -0.6 573,920 - -0.1 573,920 - -0.3 573,923 + +0.3 573,923 + -0.9 573,923 + -0.5 573,923 + -0.6 573,923 + -0.4 573,924 - +0.1 573,924 - -0.1 573,924 - +0.9 573,924 - -1.5 573,924 - -0.1 573,924 - -0.5 573,924 - -0.2 573,924 - +0.6 574,342 + GFF534 0.21 -1.9 574,342 + GFF534 0.21 -1.3 574,342 + GFF534 0.21 +0.3 574,382 - GFF534 0.23 -0.2 574,382 - GFF534 0.23 -1.7 574,382 - GFF534 0.23 +0.2 574,382 - GFF534 0.23 -0.0
Or see this region's nucleotide sequence