Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5298 and GFF5299 are separated by 71 nucleotides GFF5299 and GFF5300 are separated by 57 nucleotides GFF5300 and GFF5301 are separated by 17 nucleotides
GFF5298 - FIG01204242: hypothetical protein, at 171,517 to 173,733
GFF5298
GFF5299 - TonB-dependent receptor, at 173,805 to 175,940
GFF5299
GFF5300 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 175,998 to 176,873
GFF5300
GFF5301 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 176,891 to 177,709
GFF5301
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 172.834 kb on + strand, within GFF5298 at 172.835 kb on - strand, within GFF5298 at 172.835 kb on - strand, within GFF5298 at 172.885 kb on + strand, within GFF5298 at 172.886 kb on - strand, within GFF5298 at 172.886 kb on - strand, within GFF5298 at 172.897 kb on + strand, within GFF5298 at 172.991 kb on - strand, within GFF5298 at 173.009 kb on - strand, within GFF5298 at 173.009 kb on - strand, within GFF5298 at 173.009 kb on - strand, within GFF5298 at 173.080 kb on + strand, within GFF5298 at 173.080 kb on + strand, within GFF5298 at 173.081 kb on - strand, within GFF5298 at 173.081 kb on - strand, within GFF5298 at 173.081 kb on - strand, within GFF5298 at 173.101 kb on + strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.102 kb on - strand, within GFF5298 at 173.329 kb on + strand, within GFF5298 at 173.330 kb on - strand, within GFF5298 at 173.506 kb on + strand, within GFF5298 at 174.078 kb on + strand, within GFF5299 at 174.079 kb on - strand, within GFF5299 at 174.154 kb on - strand, within GFF5299 at 174.264 kb on + strand, within GFF5299 at 174.265 kb on - strand, within GFF5299 at 174.408 kb on + strand, within GFF5299 at 174.409 kb on - strand, within GFF5299 at 174.409 kb on - strand, within GFF5299 at 174.409 kb on - strand, within GFF5299 at 174.624 kb on + strand, within GFF5299 at 174.625 kb on - strand, within GFF5299 at 174.670 kb on - strand, within GFF5299 at 174.670 kb on - strand, within GFF5299 at 174.741 kb on + strand, within GFF5299 at 174.742 kb on - strand, within GFF5299 at 174.891 kb on + strand, within GFF5299 at 174.892 kb on - strand, within GFF5299 at 174.930 kb on + strand, within GFF5299 at 174.930 kb on + strand, within GFF5299 at 174.930 kb on + strand, within GFF5299 at 174.930 kb on + strand, within GFF5299 at 174.931 kb on - strand, within GFF5299 at 174.931 kb on - strand, within GFF5299 at 175.107 kb on + strand, within GFF5299 at 175.107 kb on + strand, within GFF5299 at 175.108 kb on - strand, within GFF5299 at 175.108 kb on - strand, within GFF5299 at 175.108 kb on - strand, within GFF5299 at 175.260 kb on + strand, within GFF5299 at 175.521 kb on + strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.522 kb on - strand, within GFF5299 at 175.542 kb on + strand, within GFF5299 at 175.542 kb on + strand, within GFF5299 at 175.762 kb on - strand at 175.839 kb on + strand at 175.839 kb on + strand at 175.839 kb on + strand at 175.840 kb on - strand at 175.881 kb on + strand at 175.881 kb on + strand at 175.882 kb on - strand at 175.882 kb on - strand at 175.882 kb on - strand at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.314 kb on + strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.315 kb on - strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.473 kb on + strand, within GFF5300 at 176.474 kb on - strand, within GFF5300 at 176.647 kb on + strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.648 kb on - strand, within GFF5300 at 176.669 kb on - strand, within GFF5300
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 172,834 + GFF5298 0.59 +0.8 172,835 - GFF5298 0.59 -0.2 172,835 - GFF5298 0.59 +0.2 172,885 + GFF5298 0.62 +0.2 172,886 - GFF5298 0.62 -0.6 172,886 - GFF5298 0.62 -0.1 172,897 + GFF5298 0.62 +0.6 172,991 - GFF5298 0.66 -1.0 173,009 - GFF5298 0.67 -0.2 173,009 - GFF5298 0.67 +0.1 173,009 - GFF5298 0.67 -0.4 173,080 + GFF5298 0.71 -0.5 173,080 + GFF5298 0.71 -1.5 173,081 - GFF5298 0.71 -0.8 173,081 - GFF5298 0.71 -1.1 173,081 - GFF5298 0.71 +0.1 173,101 + GFF5298 0.71 -0.8 173,102 - GFF5298 0.71 -0.1 173,102 - GFF5298 0.71 -0.3 173,102 - GFF5298 0.71 -1.1 173,102 - GFF5298 0.71 -0.2 173,102 - GFF5298 0.71 -1.7 173,102 - GFF5298 0.71 -0.6 173,329 + GFF5298 0.82 +0.3 173,330 - GFF5298 0.82 -0.5 173,506 + GFF5298 0.90 +0.2 174,078 + GFF5299 0.13 -0.4 174,079 - GFF5299 0.13 -1.1 174,154 - GFF5299 0.16 +1.2 174,264 + GFF5299 0.21 -0.1 174,265 - GFF5299 0.22 +0.1 174,408 + GFF5299 0.28 +1.1 174,409 - GFF5299 0.28 -0.2 174,409 - GFF5299 0.28 -0.2 174,409 - GFF5299 0.28 -0.6 174,624 + GFF5299 0.38 +0.4 174,625 - GFF5299 0.38 +0.9 174,670 - GFF5299 0.40 -2.7 174,670 - GFF5299 0.40 +0.2 174,741 + GFF5299 0.44 -0.4 174,742 - GFF5299 0.44 +0.7 174,891 + GFF5299 0.51 +0.1 174,892 - GFF5299 0.51 -0.4 174,930 + GFF5299 0.53 +0.3 174,930 + GFF5299 0.53 +0.9 174,930 + GFF5299 0.53 -0.9 174,930 + GFF5299 0.53 -1.8 174,931 - GFF5299 0.53 -0.6 174,931 - GFF5299 0.53 -0.1 175,107 + GFF5299 0.61 -0.7 175,107 + GFF5299 0.61 -0.3 175,108 - GFF5299 0.61 -0.2 175,108 - GFF5299 0.61 -0.6 175,108 - GFF5299 0.61 -0.7 175,260 + GFF5299 0.68 -0.1 175,521 + GFF5299 0.80 -0.5 175,522 - GFF5299 0.80 +0.3 175,522 - GFF5299 0.80 -0.5 175,522 - GFF5299 0.80 -1.1 175,522 - GFF5299 0.80 +0.9 175,522 - GFF5299 0.80 +0.6 175,522 - GFF5299 0.80 -0.3 175,522 - GFF5299 0.80 -1.5 175,522 - GFF5299 0.80 +0.4 175,542 + GFF5299 0.81 -1.8 175,542 + GFF5299 0.81 +0.1 175,762 - -0.4 175,839 + -0.5 175,839 + -0.0 175,839 + +0.3 175,840 - +0.3 175,881 + -0.8 175,881 + -0.4 175,882 - -0.3 175,882 - +0.6 175,882 - -0.5 176,314 + GFF5300 0.36 +0.1 176,314 + GFF5300 0.36 +0.5 176,314 + GFF5300 0.36 +0.2 176,314 + GFF5300 0.36 -0.2 176,314 + GFF5300 0.36 -0.1 176,314 + GFF5300 0.36 -0.2 176,315 - GFF5300 0.36 +0.8 176,315 - GFF5300 0.36 -0.3 176,315 - GFF5300 0.36 -0.6 176,473 + GFF5300 0.54 +0.4 176,473 + GFF5300 0.54 +1.3 176,473 + GFF5300 0.54 -1.0 176,473 + GFF5300 0.54 -0.4 176,474 - GFF5300 0.54 +0.7 176,647 + GFF5300 0.74 -3.2 176,648 - GFF5300 0.74 -0.4 176,648 - GFF5300 0.74 -0.7 176,648 - GFF5300 0.74 -1.9 176,669 - GFF5300 0.77 -0.9
Or see this region's nucleotide sequence