Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5286 and GFF5287 are separated by 1 nucleotides GFF5287 and GFF5288 are separated by 13 nucleotides GFF5288 and GFF5289 overlap by 4 nucleotides GFF5289 and GFF5290 are separated by 137 nucleotides
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043
GFF5287
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
GFF5289 - hypothetical protein, at 160,669 to 161,424
GFF5289
GFF5290 - hypothetical protein, at 161,562 to 161,909
GFF5290
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.093 kb on - strand at 157.093 kb on - strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.143 kb on + strand at 157.144 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.185 kb on + strand at 157.186 kb on - strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.242 kb on + strand at 157.242 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.320 kb on + strand at 157.321 kb on - strand at 157.321 kb on - strand at 157.729 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.796 kb on - strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 158.378 kb on + strand, within GFF5288 at 158.378 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.544 kb on - strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 159.059 kb on + strand, within GFF5288 at 159.060 kb on - strand, within GFF5288 at 159.060 kb on - strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.080 kb on + strand, within GFF5288 at 159.081 kb on - strand, within GFF5288 at 159.081 kb on - strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.161 kb on + strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.162 kb on - strand, within GFF5288 at 159.545 kb on + strand, within GFF5288 at 159.546 kb on - strand, within GFF5288 at 159.816 kb on + strand, within GFF5288 at 160.089 kb on - strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.296 kb on - strand, within GFF5288 at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.652 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.670 kb on + strand at 160.670 kb on + strand at 160.671 kb on - strand at 160.757 kb on + strand, within GFF5289 at 161.351 kb on + strand at 161.352 kb on - strand at 161.584 kb on + strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 157,092 + -0.8 157,092 + -1.9 157,092 + +0.2 157,092 + -0.5 157,092 + -0.5 157,093 - +2.8 157,093 - -0.7 157,132 + -0.5 157,132 + +0.2 157,132 + -0.3 157,132 + -1.2 157,143 + -0.2 157,144 - -1.2 157,170 + -0.9 157,171 - -1.1 157,171 - -0.7 157,185 + -0.7 157,186 - +0.1 157,239 + -0.1 157,239 + -1.1 157,239 + -0.6 157,239 + -0.5 157,239 + -0.2 157,239 + -1.1 157,240 - -0.2 157,240 - -0.4 157,240 - -0.1 157,240 - -0.6 157,240 - +0.3 157,240 - +0.1 157,240 - -0.6 157,240 - -0.9 157,240 - +0.6 157,240 - +0.3 157,240 - -0.5 157,240 - +0.7 157,240 - -0.4 157,242 + -1.2 157,242 + +0.9 157,263 + -0.3 157,263 + -1.2 157,263 + +0.7 157,264 - +0.8 157,264 - +0.5 157,264 - +0.0 157,264 - +0.1 157,320 + +0.5 157,321 - -0.2 157,321 - -0.5 157,729 + GFF5287 0.56 +0.3 157,795 + GFF5287 0.65 -0.8 157,795 + GFF5287 0.65 -1.2 157,795 + GFF5287 0.65 -1.6 157,795 + GFF5287 0.65 -0.7 157,795 + GFF5287 0.65 -0.0 157,795 + GFF5287 0.65 -0.2 157,796 - GFF5287 0.66 -0.0 157,861 + GFF5287 0.75 +0.1 157,861 + GFF5287 0.75 +0.4 157,861 + GFF5287 0.75 -0.1 157,861 + GFF5287 0.75 -0.4 157,861 + GFF5287 0.75 +0.1 157,862 - GFF5287 0.75 -0.6 157,862 - GFF5287 0.75 +0.3 157,862 - GFF5287 0.75 -0.2 157,918 + GFF5287 0.82 -0.7 157,918 + GFF5287 0.82 -1.4 157,918 + GFF5287 0.82 +1.2 157,919 - GFF5287 0.83 -0.1 157,919 - GFF5287 0.83 -1.0 157,919 - GFF5287 0.83 -0.8 157,919 - GFF5287 0.83 -1.0 157,919 - GFF5287 0.83 -0.2 158,378 + GFF5288 0.12 -2.3 158,378 + GFF5288 0.12 +0.9 158,390 + GFF5288 0.13 -0.6 158,390 + GFF5288 0.13 -0.1 158,391 - GFF5288 0.13 -1.5 158,391 - GFF5288 0.13 -0.6 158,543 + GFF5288 0.19 +1.5 158,543 + GFF5288 0.19 -0.9 158,544 - GFF5288 0.19 -1.7 158,666 + GFF5288 0.23 +0.2 158,666 + GFF5288 0.23 -0.8 158,666 + GFF5288 0.23 +0.3 158,666 + GFF5288 0.23 +0.0 158,666 + GFF5288 0.23 -0.3 158,667 - GFF5288 0.23 +0.0 158,667 - GFF5288 0.23 -0.4 158,667 - GFF5288 0.23 -1.3 158,667 - GFF5288 0.23 -0.7 158,667 - GFF5288 0.23 -0.5 158,667 - GFF5288 0.23 +1.9 158,667 - GFF5288 0.23 -2.7 158,667 - GFF5288 0.23 -1.7 158,667 - GFF5288 0.23 -0.2 158,667 - GFF5288 0.23 -3.0 158,667 - GFF5288 0.23 -1.1 158,667 - GFF5288 0.23 -0.0 158,667 - GFF5288 0.23 -0.7 158,667 - GFF5288 0.23 -0.1 158,667 - GFF5288 0.23 -0.2 158,667 - GFF5288 0.23 -0.8 158,693 + GFF5288 0.24 -0.6 158,693 + GFF5288 0.24 -1.1 158,694 - GFF5288 0.24 -0.3 158,694 - GFF5288 0.24 -0.3 158,694 - GFF5288 0.24 -0.1 159,059 + GFF5288 0.38 -1.2 159,060 - GFF5288 0.38 -0.4 159,060 - GFF5288 0.38 -0.6 159,080 + GFF5288 0.39 -1.1 159,080 + GFF5288 0.39 -0.5 159,080 + GFF5288 0.39 +0.1 159,080 + GFF5288 0.39 -0.1 159,080 + GFF5288 0.39 -0.3 159,080 + GFF5288 0.39 +0.7 159,081 - GFF5288 0.39 -1.0 159,081 - GFF5288 0.39 +1.7 159,161 + GFF5288 0.42 -0.4 159,161 + GFF5288 0.42 +0.2 159,161 + GFF5288 0.42 -0.4 159,161 + GFF5288 0.42 -0.1 159,161 + GFF5288 0.42 -0.3 159,161 + GFF5288 0.42 +1.2 159,162 - GFF5288 0.42 +0.3 159,162 - GFF5288 0.42 -0.1 159,162 - GFF5288 0.42 +0.5 159,545 + GFF5288 0.57 -1.9 159,546 - GFF5288 0.57 +0.4 159,816 + GFF5288 0.67 -0.4 160,089 - GFF5288 0.78 +0.5 160,295 + GFF5288 0.86 +0.9 160,295 + GFF5288 0.86 -1.2 160,295 + GFF5288 0.86 +1.1 160,296 - GFF5288 0.86 -1.2 160,481 + +0.1 160,481 + +0.3 160,481 + -0.3 160,481 + +0.7 160,481 + -0.7 160,481 + +0.3 160,482 - -0.5 160,482 - -1.1 160,482 - +2.3 160,482 - +0.1 160,482 - +0.2 160,482 - -0.0 160,482 - -0.1 160,482 - +0.1 160,482 - +0.3 160,482 - -0.2 160,652 + -0.5 160,667 + -0.9 160,667 + -1.1 160,667 + +0.1 160,667 + -0.1 160,667 + -0.5 160,667 + -0.7 160,668 - -2.0 160,668 - -0.6 160,668 - -0.4 160,668 - +0.4 160,668 - -1.1 160,668 - +0.1 160,670 + -0.4 160,670 + -1.5 160,671 - +1.0 160,757 + GFF5289 0.12 -0.1 161,351 + -0.4 161,352 - -0.9 161,584 + +0.2 161,585 - +1.1 161,585 - -0.1 161,585 - +0.3 161,585 - +0.7
Or see this region's nucleotide sequence