Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5285 and GFF5286 are separated by 122 nucleotides GFF5286 and GFF5287 are separated by 1 nucleotides GFF5287 and GFF5288 are separated by 13 nucleotides
GFF5285 - Fe2+-dicitrate sensor, membrane component, at 153,694 to 154,719
GFF5285
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043
GFF5287
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
Position (kb) 154
155
156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.072 kb on + strand, within GFF5285 at 154.073 kb on - strand, within GFF5285 at 154.556 kb on - strand, within GFF5285 at 154.709 kb on + strand at 154.709 kb on + strand at 154.777 kb on + strand at 154.791 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.984 kb on - strand at 154.984 kb on - strand at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.718 kb on + strand, within GFF5286 at 155.719 kb on - strand, within GFF5286 at 155.791 kb on - strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.824 kb on - strand, within GFF5286 at 155.910 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.926 kb on - strand, within GFF5286 at 155.926 kb on - strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.121 kb on - strand, within GFF5286 at 156.219 kb on + strand, within GFF5286 at 156.219 kb on + strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.297 kb on + strand, within GFF5286 at 156.309 kb on + strand, within GFF5286 at 156.354 kb on + strand, within GFF5286 at 156.355 kb on - strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.033 kb on - strand, within GFF5286 at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.093 kb on - strand at 157.093 kb on - strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.143 kb on + strand at 157.144 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.185 kb on + strand at 157.186 kb on - strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.242 kb on + strand at 157.242 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.320 kb on + strand at 157.321 kb on - strand at 157.321 kb on - strand at 157.729 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.796 kb on - strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 154,015 + GFF5285 0.31 -0.4 154,015 + GFF5285 0.31 -0.4 154,015 + GFF5285 0.31 -0.8 154,016 - GFF5285 0.31 -1.2 154,016 - GFF5285 0.31 +0.4 154,016 - GFF5285 0.31 -0.3 154,072 + GFF5285 0.37 -0.5 154,073 - GFF5285 0.37 -0.1 154,556 - GFF5285 0.84 -2.0 154,709 + +0.1 154,709 + +0.2 154,777 + -1.1 154,791 + -0.5 154,983 + -1.2 154,983 + -0.3 154,983 + -1.2 154,983 + -1.3 154,984 - -0.2 154,984 - -0.5 155,106 + GFF5286 0.11 -0.0 155,106 + GFF5286 0.11 +0.6 155,106 + GFF5286 0.11 -0.3 155,106 + GFF5286 0.11 +0.9 155,107 - GFF5286 0.11 -0.6 155,107 - GFF5286 0.11 +1.2 155,107 - GFF5286 0.11 -0.9 155,107 - GFF5286 0.11 -0.3 155,107 - GFF5286 0.11 -0.1 155,107 - GFF5286 0.11 +0.6 155,107 - GFF5286 0.11 +0.3 155,107 - GFF5286 0.11 -0.9 155,107 - GFF5286 0.11 -0.7 155,107 - GFF5286 0.11 -0.2 155,625 + GFF5286 0.32 +1.1 155,625 + GFF5286 0.32 +0.1 155,625 + GFF5286 0.32 -0.4 155,718 + GFF5286 0.35 -0.5 155,719 - GFF5286 0.35 -0.8 155,791 - GFF5286 0.38 -1.3 155,823 + GFF5286 0.40 +0.3 155,823 + GFF5286 0.40 +0.6 155,823 + GFF5286 0.40 -0.1 155,823 + GFF5286 0.40 -0.1 155,824 - GFF5286 0.40 +1.3 155,910 + GFF5286 0.43 -0.9 155,925 + GFF5286 0.44 -0.2 155,925 + GFF5286 0.44 +0.3 155,925 + GFF5286 0.44 -0.5 155,925 + GFF5286 0.44 -1.3 155,925 + GFF5286 0.44 -0.4 155,926 - GFF5286 0.44 +1.2 155,926 - GFF5286 0.44 -0.5 156,105 + GFF5286 0.51 -0.5 156,105 + GFF5286 0.51 -0.6 156,105 + GFF5286 0.51 -0.5 156,105 + GFF5286 0.51 +0.2 156,105 + GFF5286 0.51 -0.1 156,105 + GFF5286 0.51 +1.3 156,105 + GFF5286 0.51 -0.8 156,105 + GFF5286 0.51 -1.3 156,106 - GFF5286 0.51 -1.3 156,106 - GFF5286 0.51 +0.3 156,106 - GFF5286 0.51 -0.9 156,106 - GFF5286 0.51 +0.0 156,120 + GFF5286 0.52 +0.2 156,120 + GFF5286 0.52 -0.9 156,120 + GFF5286 0.52 -0.7 156,120 + GFF5286 0.52 -1.8 156,121 - GFF5286 0.52 -0.7 156,219 + GFF5286 0.56 +0.5 156,219 + GFF5286 0.56 -0.2 156,220 - GFF5286 0.56 +1.3 156,220 - GFF5286 0.56 -0.5 156,220 - GFF5286 0.56 +0.3 156,220 - GFF5286 0.56 -1.1 156,220 - GFF5286 0.56 -0.2 156,231 + GFF5286 0.56 -0.2 156,231 + GFF5286 0.56 +3.9 156,231 + GFF5286 0.56 -0.1 156,231 + GFF5286 0.56 +0.1 156,232 - GFF5286 0.56 +0.1 156,232 - GFF5286 0.56 +0.7 156,232 - GFF5286 0.56 -0.5 156,232 - GFF5286 0.56 -0.3 156,297 + GFF5286 0.59 -0.6 156,309 + GFF5286 0.59 +0.3 156,354 + GFF5286 0.61 +0.5 156,355 - GFF5286 0.61 -0.6 156,369 + GFF5286 0.62 -1.1 156,369 + GFF5286 0.62 +0.9 156,600 + GFF5286 0.71 -0.1 156,600 + GFF5286 0.71 +0.9 156,601 - GFF5286 0.71 -0.0 156,601 - GFF5286 0.71 -0.6 156,601 - GFF5286 0.71 -0.8 156,601 - GFF5286 0.71 +0.5 156,601 - GFF5286 0.71 -0.1 156,601 - GFF5286 0.71 -1.4 156,627 + GFF5286 0.72 -1.3 156,627 + GFF5286 0.72 -0.6 156,636 + GFF5286 0.72 +0.3 156,636 + GFF5286 0.72 -1.0 156,636 + GFF5286 0.72 +0.3 156,636 + GFF5286 0.72 +0.8 156,636 + GFF5286 0.72 -0.0 156,636 + GFF5286 0.72 +3.9 156,636 + GFF5286 0.72 -2.7 156,637 - GFF5286 0.72 -0.1 156,637 - GFF5286 0.72 -0.5 156,637 - GFF5286 0.72 -1.3 156,637 - GFF5286 0.72 -1.1 156,637 - GFF5286 0.72 +0.7 156,637 - GFF5286 0.72 +0.1 156,688 - GFF5286 0.74 -1.9 156,688 - GFF5286 0.74 +1.4 156,936 + GFF5286 0.84 -0.7 156,936 + GFF5286 0.84 -0.4 156,936 + GFF5286 0.84 -1.3 156,937 - GFF5286 0.84 +0.0 156,937 - GFF5286 0.84 -0.5 156,942 + GFF5286 0.85 +0.3 156,942 + GFF5286 0.85 -0.1 156,943 - GFF5286 0.85 +0.2 156,943 - GFF5286 0.85 -0.4 156,943 - GFF5286 0.85 -0.8 156,975 + GFF5286 0.86 +0.9 156,975 + GFF5286 0.86 -0.3 156,975 + GFF5286 0.86 -0.2 156,975 + GFF5286 0.86 +0.1 157,032 + GFF5286 0.88 +0.9 157,032 + GFF5286 0.88 +0.9 157,033 - GFF5286 0.88 +0.1 157,092 + -0.8 157,092 + -1.9 157,092 + +0.2 157,092 + -0.5 157,092 + -0.5 157,093 - +2.8 157,093 - -0.7 157,132 + -0.5 157,132 + +0.2 157,132 + -0.3 157,132 + -1.2 157,143 + -0.2 157,144 - -1.2 157,170 + -0.9 157,171 - -1.1 157,171 - -0.7 157,185 + -0.7 157,186 - +0.1 157,239 + -0.1 157,239 + -1.1 157,239 + -0.6 157,239 + -0.5 157,239 + -0.2 157,239 + -1.1 157,240 - -0.2 157,240 - -0.4 157,240 - -0.1 157,240 - -0.6 157,240 - +0.3 157,240 - +0.1 157,240 - -0.6 157,240 - -0.9 157,240 - +0.6 157,240 - +0.3 157,240 - -0.5 157,240 - +0.7 157,240 - -0.4 157,242 + -1.2 157,242 + +0.9 157,263 + -0.3 157,263 + -1.2 157,263 + +0.7 157,264 - +0.8 157,264 - +0.5 157,264 - +0.0 157,264 - +0.1 157,320 + +0.5 157,321 - -0.2 157,321 - -0.5 157,729 + GFF5287 0.56 +0.3 157,795 + GFF5287 0.65 -0.8 157,795 + GFF5287 0.65 -1.2 157,795 + GFF5287 0.65 -1.6 157,795 + GFF5287 0.65 -0.7 157,795 + GFF5287 0.65 -0.0 157,795 + GFF5287 0.65 -0.2 157,796 - GFF5287 0.66 -0.0 157,861 + GFF5287 0.75 +0.1 157,861 + GFF5287 0.75 +0.4 157,861 + GFF5287 0.75 -0.1 157,861 + GFF5287 0.75 -0.4 157,861 + GFF5287 0.75 +0.1 157,862 - GFF5287 0.75 -0.6 157,862 - GFF5287 0.75 +0.3 157,862 - GFF5287 0.75 -0.2 157,918 + GFF5287 0.82 -0.7 157,918 + GFF5287 0.82 -1.4 157,918 + GFF5287 0.82 +1.2 157,919 - GFF5287 0.83 -0.1 157,919 - GFF5287 0.83 -1.0 157,919 - GFF5287 0.83 -0.8 157,919 - GFF5287 0.83 -1.0 157,919 - GFF5287 0.83 -0.2
Or see this region's nucleotide sequence