Strain Fitness in Variovorax sp. SCN45 around GFF5266

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5265 and GFF5266 are separated by 247 nucleotidesGFF5266 and GFF5267 are separated by 2 nucleotides GFF5265 - Outer membrane lipoprotein, at 132,931 to 133,599 GFF5265 GFF5266 - Transaldolase (EC 2.2.1.2), at 133,847 to 134,803 GFF5266 GFF5267 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 134,806 to 136,359 GFF5267 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.932 kb on + strandat 132.946 kb on + strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.947 kb on - strandat 132.984 kb on - strandat 133.082 kb on + strand, within GFF5265at 133.082 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.109 kb on + strand, within GFF5265at 133.292 kb on + strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.293 kb on - strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.370 kb on + strand, within GFF5265at 133.371 kb on - strand, within GFF5265at 133.622 kb on + strandat 133.629 kb on + strandat 133.695 kb on + strandat 133.695 kb on + strandat 133.696 kb on - strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.722 kb on + strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.770 kb on + strandat 133.770 kb on + strandat 133.771 kb on - strandat 133.771 kb on - strandat 133.837 kb on + strandat 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.180 kb on + strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.181 kb on - strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.375 kb on + strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.376 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.385 kb on - strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.468 kb on + strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.469 kb on - strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.474 kb on + strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.475 kb on - strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.477 kb on + strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.478 kb on - strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.672 kb on + strand, within GFF5266at 134.673 kb on - strand, within GFF5266at 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.801 kb on + strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.802 kb on - strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.950 kb on + strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 134.951 kb on - strandat 135.196 kb on + strand, within GFF5267at 135.197 kb on - strand, within GFF5267at 135.590 kb on - strand, within GFF5267

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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132,932 + -0.3
132,946 + -1.1
132,947 - -1.4
132,947 - +0.8
132,947 - -0.3
132,947 - -2.0
132,947 - +0.5
132,947 - +0.8
132,947 - -0.5
132,984 - +0.3
133,082 + GFF5265 0.23 -1.6
133,082 + GFF5265 0.23 +0.8
133,109 + GFF5265 0.27 -1.2
133,109 + GFF5265 0.27 +1.5
133,109 + GFF5265 0.27 -1.2
133,292 + GFF5265 0.54 -0.9
133,293 - GFF5265 0.54 +0.1
133,293 - GFF5265 0.54 -0.5
133,293 - GFF5265 0.54 +0.3
133,370 + GFF5265 0.66 -0.1
133,370 + GFF5265 0.66 -2.4
133,371 - GFF5265 0.66 -0.3
133,622 + +0.1
133,629 + +0.5
133,695 + -0.2
133,695 + -1.0
133,696 - -0.7
133,722 + +0.0
133,722 + +0.6
133,722 + -0.5
133,723 - -1.3
133,723 - -1.1
133,723 - -0.0
133,723 - -0.5
133,723 - -1.1
133,770 + -2.1
133,770 + +1.7
133,771 - -0.6
133,771 - -1.2
133,837 + +0.2
134,180 + GFF5266 0.35 -0.8
134,180 + GFF5266 0.35 -0.5
134,180 + GFF5266 0.35 -0.7
134,180 + GFF5266 0.35 -0.4
134,180 + GFF5266 0.35 +0.1
134,181 - GFF5266 0.35 -0.7
134,181 - GFF5266 0.35 -0.9
134,181 - GFF5266 0.35 -0.9
134,375 + GFF5266 0.55 -0.4
134,375 + GFF5266 0.55 -1.4
134,376 - GFF5266 0.55 -1.1
134,376 - GFF5266 0.55 +0.9
134,376 - GFF5266 0.55 -0.5
134,385 - GFF5266 0.56 -2.5
134,385 - GFF5266 0.56 +0.2
134,385 - GFF5266 0.56 -2.1
134,385 - GFF5266 0.56 -1.9
134,385 - GFF5266 0.56 +0.2
134,385 - GFF5266 0.56 -1.5
134,468 + GFF5266 0.65 -0.7
134,468 + GFF5266 0.65 -0.2
134,468 + GFF5266 0.65 -0.7
134,468 + GFF5266 0.65 -0.6
134,468 + GFF5266 0.65 -0.5
134,468 + GFF5266 0.65 -0.5
134,468 + GFF5266 0.65 -0.4
134,469 - GFF5266 0.65 -1.2
134,469 - GFF5266 0.65 -0.9
134,469 - GFF5266 0.65 -0.7
134,469 - GFF5266 0.65 +0.3
134,474 + GFF5266 0.66 -0.0
134,474 + GFF5266 0.66 -0.0
134,475 - GFF5266 0.66 -0.7
134,475 - GFF5266 0.66 -2.2
134,475 - GFF5266 0.66 -1.5
134,475 - GFF5266 0.66 -0.6
134,477 + GFF5266 0.66 -0.5
134,477 + GFF5266 0.66 -1.1
134,477 + GFF5266 0.66 -0.8
134,477 + GFF5266 0.66 -2.1
134,477 + GFF5266 0.66 -0.5
134,477 + GFF5266 0.66 -0.6
134,477 + GFF5266 0.66 -0.6
134,477 + GFF5266 0.66 -0.0
134,478 - GFF5266 0.66 -0.2
134,478 - GFF5266 0.66 -0.1
134,478 - GFF5266 0.66 -1.9
134,478 - GFF5266 0.66 +0.3
134,672 + GFF5266 0.86 +0.2
134,672 + GFF5266 0.86 -0.4
134,672 + GFF5266 0.86 +1.2
134,673 - GFF5266 0.86 -1.2
134,801 + +0.1
134,801 + -0.7
134,801 + +1.3
134,801 + -0.6
134,801 + +0.2
134,801 + +0.3
134,802 - -1.1
134,802 - -0.3
134,802 - +0.6
134,802 - -0.4
134,950 + -0.5
134,950 + +0.2
134,950 + +0.7
134,950 + -1.3
134,950 + -0.6
134,950 + -0.4
134,950 + +0.9
134,950 + +0.2
134,951 - -0.7
134,951 - -1.1
134,951 - +0.2
134,951 - +0.3
134,951 - +0.3
134,951 - -0.7
134,951 - -0.8
134,951 - -0.1
135,196 + GFF5267 0.25 -0.1
135,197 - GFF5267 0.25 -1.2
135,590 - GFF5267 0.50 +0.9

Or see this region's nucleotide sequence