Strain Fitness in Variovorax sp. SCN45 around GFF5244

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5241 and GFF5242 overlap by 1 nucleotidesGFF5242 and GFF5243 overlap by 4 nucleotidesGFF5243 and GFF5244 overlap by 26 nucleotidesGFF5244 and GFF5245 are separated by 136 nucleotidesGFF5245 and GFF5246 are separated by 67 nucleotides GFF5241 - General secretion pathway protein J, at 106,508 to 107,206 GFF5241 GFF5242 - General secretion pathway protein I, at 107,206 to 107,601 GFF5242 GFF5243 - General secretion pathway protein H, at 107,598 to 108,104 GFF5243 GFF5244 - General secretion pathway protein G, at 108,079 to 108,570 GFF5244 GFF5245 - FIG00771430: hypothetical protein, at 108,707 to 109,186 GFF5245 GFF5246 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 109,254 to 110,834 GFF5246 Position (kb) 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 107.105 kb on + strand, within GFF5241at 107.105 kb on + strand, within GFF5241at 107.105 kb on + strand, within GFF5241at 107.106 kb on - strand, within GFF5241at 107.210 kb on + strandat 107.210 kb on + strandat 107.211 kb on - strandat 107.211 kb on - strandat 107.680 kb on + strand, within GFF5243at 107.680 kb on + strand, within GFF5243at 107.681 kb on - strand, within GFF5243at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.182 kb on + strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.183 kb on - strand, within GFF5244at 108.188 kb on + strand, within GFF5244at 108.189 kb on - strand, within GFF5244at 108.189 kb on - strand, within GFF5244at 108.227 kb on + strand, within GFF5244at 108.228 kb on - strand, within GFF5244at 108.326 kb on + strand, within GFF5244at 108.490 kb on - strand, within GFF5244at 108.513 kb on + strand, within GFF5244at 108.514 kb on - strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.519 kb on + strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.520 kb on - strand, within GFF5244at 108.581 kb on + strandat 108.581 kb on + strandat 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.923 kb on + strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 108.924 kb on - strand, within GFF5245at 109.277 kb on - strandat 109.303 kb on + strandat 109.304 kb on - strandat 109.304 kb on - strandat 109.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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107,105 + GFF5241 0.85 +0.9
107,105 + GFF5241 0.85 -0.2
107,105 + GFF5241 0.85 -2.3
107,106 - GFF5241 0.86 -0.3
107,210 + -1.6
107,210 + -1.2
107,211 - -0.1
107,211 - +0.9
107,680 + GFF5243 0.16 -0.5
107,680 + GFF5243 0.16 +0.6
107,681 - GFF5243 0.16 -0.2
108,182 + GFF5244 0.21 +0.4
108,182 + GFF5244 0.21 -0.4
108,182 + GFF5244 0.21 +0.3
108,182 + GFF5244 0.21 +0.4
108,182 + GFF5244 0.21 -0.5
108,182 + GFF5244 0.21 +1.7
108,182 + GFF5244 0.21 +0.7
108,183 - GFF5244 0.21 -0.1
108,183 - GFF5244 0.21 +0.1
108,183 - GFF5244 0.21 +0.6
108,183 - GFF5244 0.21 +0.3
108,183 - GFF5244 0.21 +0.3
108,183 - GFF5244 0.21 +0.7
108,183 - GFF5244 0.21 +0.3
108,188 + GFF5244 0.22 +1.3
108,189 - GFF5244 0.22 +0.9
108,189 - GFF5244 0.22 +0.6
108,227 + GFF5244 0.30 -0.7
108,228 - GFF5244 0.30 +2.5
108,326 + GFF5244 0.50 +0.2
108,490 - GFF5244 0.84 +1.1
108,513 + GFF5244 0.88 +0.2
108,514 - GFF5244 0.88 -0.1
108,519 + GFF5244 0.89 +0.6
108,519 + GFF5244 0.89 +0.2
108,519 + GFF5244 0.89 +0.6
108,519 + GFF5244 0.89 -1.2
108,519 + GFF5244 0.89 -0.6
108,519 + GFF5244 0.89 -0.7
108,519 + GFF5244 0.89 +0.5
108,520 - GFF5244 0.90 +0.2
108,520 - GFF5244 0.90 +0.7
108,520 - GFF5244 0.90 +0.9
108,520 - GFF5244 0.90 -0.6
108,520 - GFF5244 0.90 -0.1
108,520 - GFF5244 0.90 -0.9
108,581 + -0.2
108,581 + +0.6
108,923 + GFF5245 0.45 -0.2
108,923 + GFF5245 0.45 -0.4
108,923 + GFF5245 0.45 -0.3
108,923 + GFF5245 0.45 -0.4
108,923 + GFF5245 0.45 -0.6
108,923 + GFF5245 0.45 +0.2
108,923 + GFF5245 0.45 +0.1
108,923 + GFF5245 0.45 +0.1
108,923 + GFF5245 0.45 +0.4
108,923 + GFF5245 0.45 -0.8
108,923 + GFF5245 0.45 -0.6
108,923 + GFF5245 0.45 +0.2
108,923 + GFF5245 0.45 -0.2
108,923 + GFF5245 0.45 +0.6
108,923 + GFF5245 0.45 -1.5
108,923 + GFF5245 0.45 -0.1
108,923 + GFF5245 0.45 +0.2
108,923 + GFF5245 0.45 +0.1
108,923 + GFF5245 0.45 +0.2
108,923 + GFF5245 0.45 -1.8
108,923 + GFF5245 0.45 -0.8
108,924 - GFF5245 0.45 -0.6
108,924 - GFF5245 0.45 +0.3
108,924 - GFF5245 0.45 +0.3
108,924 - GFF5245 0.45 -0.0
108,924 - GFF5245 0.45 +1.3
108,924 - GFF5245 0.45 +0.6
108,924 - GFF5245 0.45 +0.8
108,924 - GFF5245 0.45 -0.2
108,924 - GFF5245 0.45 +0.1
108,924 - GFF5245 0.45 +0.0
108,924 - GFF5245 0.45 +0.0
108,924 - GFF5245 0.45 +0.1
108,924 - GFF5245 0.45 -1.2
108,924 - GFF5245 0.45 -0.8
108,924 - GFF5245 0.45 -0.1
108,924 - GFF5245 0.45 +0.5
108,924 - GFF5245 0.45 +0.1
108,924 - GFF5245 0.45 -0.1
109,277 - -0.3
109,303 + +0.9
109,304 - +0.3
109,304 - +1.2
109,309 + +0.8

Or see this region's nucleotide sequence