Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5194 and GFF5195 overlap by 4 nucleotides GFF5195 and GFF5196 overlap by 14 nucleotides
GFF5194 - L-arabinose ABC transporter, substrate-binding protein AraF, at 52,683 to 53,753
GFF5194
GFF5195 - L-arabinose ABC transporter, ATP-binding protein AraG, at 53,750 to 55,321
GFF5195
GFF5196 - L-arabinose ABC transporter, permease protein AraH, at 55,308 to 56,522
GFF5196
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 52.842 kb on + strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 52.861 kb on - strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.064 kb on + strand, within GFF5194 at 53.208 kb on + strand, within GFF5194 at 53.238 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.358 kb on + strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.359 kb on - strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.634 kb on + strand, within GFF5194 at 53.635 kb on - strand, within GFF5194 at 53.665 kb on - strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.730 kb on + strand at 53.951 kb on + strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 53.952 kb on - strand, within GFF5195 at 54.134 kb on + strand, within GFF5195 at 54.134 kb on + strand, within GFF5195 at 55.106 kb on + strand, within GFF5195 at 55.107 kb on - strand, within GFF5195 at 55.115 kb on + strand, within GFF5195 at 55.116 kb on - strand, within GFF5195 at 55.209 kb on - strand at 55.209 kb on - strand at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.515 kb on + strand, within GFF5196 at 55.516 kb on - strand, within GFF5196 at 55.633 kb on - strand, within GFF5196 at 55.983 kb on + strand, within GFF5196 at 56.041 kb on - strand, within GFF5196 at 56.055 kb on + strand, within GFF5196 at 56.148 kb on + strand, within GFF5196
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 52,842 + GFF5194 0.15 +0.0 52,861 - GFF5194 0.17 +1.5 52,861 - GFF5194 0.17 +0.1 53,064 + GFF5194 0.36 -0.1 53,064 + GFF5194 0.36 -1.8 53,208 + GFF5194 0.49 -0.5 53,238 + GFF5194 0.52 -0.5 53,358 + GFF5194 0.63 -1.0 53,358 + GFF5194 0.63 -1.2 53,358 + GFF5194 0.63 +0.5 53,359 - GFF5194 0.63 -1.7 53,359 - GFF5194 0.63 +0.1 53,634 + GFF5194 0.89 +0.6 53,634 + GFF5194 0.89 +0.0 53,635 - GFF5194 0.89 +0.1 53,665 - +4.1 53,730 + -0.0 53,730 + +0.9 53,730 + +0.8 53,730 + -0.2 53,951 + GFF5195 0.13 +0.1 53,952 - GFF5195 0.13 +0.5 53,952 - GFF5195 0.13 -0.3 54,134 + GFF5195 0.24 -0.4 54,134 + GFF5195 0.24 +0.6 55,106 + GFF5195 0.86 +1.2 55,107 - GFF5195 0.86 +0.2 55,115 + GFF5195 0.87 -0.6 55,116 - GFF5195 0.87 +0.6 55,209 - +0.3 55,209 - +0.5 55,515 + GFF5196 0.17 +0.0 55,515 + GFF5196 0.17 +0.8 55,515 + GFF5196 0.17 -0.3 55,516 - GFF5196 0.17 -0.1 55,633 - GFF5196 0.27 -1.7 55,983 + GFF5196 0.56 +0.4 56,041 - GFF5196 0.60 -0.8 56,055 + GFF5196 0.61 +0.0 56,148 + GFF5196 0.69 -0.9
Or see this region's nucleotide sequence