Strain Fitness in Variovorax sp. SCN45 around GFF5180

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5178 and GFF5179 overlap by 4 nucleotidesGFF5179 and GFF5180 overlap by 4 nucleotidesGFF5180 and GFF5181 are separated by 105 nucleotidesGFF5181 and GFF5182 are separated by 732 nucleotides GFF5178 - Transcriptional regulator, Xre-family with cupin domain, at 32,178 to 32,774 GFF5178 GFF5179 - Acetyltransferase, GNAT family, at 32,771 to 33,334 GFF5179 GFF5180 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 33,331 to 34,464 GFF5180 GFF5181 - hypothetical protein, at 34,570 to 34,683 GFF5181 GFF5182 - no description, at 35,416 to 36,468 GFF5182 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.697 kb on + strand, within GFF5178at 32.697 kb on + strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.727 kb on + strandat 32.727 kb on + strandat 32.728 kb on - strandat 33.224 kb on + strand, within GFF5179at 33.224 kb on + strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.312 kb on - strandat 33.333 kb on - strandat 33.333 kb on - strandat 33.333 kb on - strandat 33.395 kb on + strandat 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.462 kb on - strand, within GFF5180at 33.462 kb on - strand, within GFF5180at 33.606 kb on - strand, within GFF5180at 33.849 kb on - strand, within GFF5180at 33.849 kb on - strand, within GFF5180at 33.900 kb on - strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.055 kb on + strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.056 kb on - strand, within GFF5180at 34.227 kb on - strand, within GFF5180at 34.367 kb on + strandat 34.367 kb on + strandat 34.368 kb on - strandat 34.368 kb on - strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.609 kb on - strand, within GFF5181at 34.609 kb on - strand, within GFF5181at 34.772 kb on + strandat 34.773 kb on - strandat 34.905 kb on + strandat 34.905 kb on + strandat 34.929 kb on + strandat 34.949 kb on + strandat 34.950 kb on - strandat 35.005 kb on - strandat 35.005 kb on - strandat 35.005 kb on - strandat 35.007 kb on - strandat 35.027 kb on + strandat 35.133 kb on + strandat 35.133 kb on + strandat 35.134 kb on - strandat 35.134 kb on - strandat 35.134 kb on - strandat 35.134 kb on - strandat 35.417 kb on + strandat 35.417 kb on + strandat 35.418 kb on - strandat 35.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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32,469 + GFF5178 0.49 +0.6
32,469 + GFF5178 0.49 -0.1
32,469 + GFF5178 0.49 +0.1
32,469 + GFF5178 0.49 -0.4
32,469 + GFF5178 0.49 -0.1
32,469 + GFF5178 0.49 -0.7
32,470 - GFF5178 0.49 -0.1
32,470 - GFF5178 0.49 -0.2
32,470 - GFF5178 0.49 +1.3
32,470 - GFF5178 0.49 -0.4
32,470 - GFF5178 0.49 -0.9
32,471 + GFF5178 0.49 -0.0
32,471 + GFF5178 0.49 -0.3
32,471 + GFF5178 0.49 -0.3
32,471 + GFF5178 0.49 +2.5
32,471 + GFF5178 0.49 -0.4
32,471 + GFF5178 0.49 -0.0
32,471 + GFF5178 0.49 +0.2
32,471 + GFF5178 0.49 -0.4
32,471 + GFF5178 0.49 -0.7
32,471 + GFF5178 0.49 -1.4
32,471 + GFF5178 0.49 -2.3
32,471 + GFF5178 0.49 +1.5
32,471 + GFF5178 0.49 +0.9
32,471 + GFF5178 0.49 -0.5
32,471 + GFF5178 0.49 -0.8
32,471 + GFF5178 0.49 +0.3
32,472 - GFF5178 0.49 -0.1
32,472 - GFF5178 0.49 -0.2
32,472 - GFF5178 0.49 +1.9
32,556 + GFF5178 0.63 -0.8
32,556 + GFF5178 0.63 +0.8
32,556 + GFF5178 0.63 +0.4
32,556 + GFF5178 0.63 -0.3
32,557 - GFF5178 0.63 +0.2
32,557 - GFF5178 0.63 -0.1
32,557 - GFF5178 0.63 +0.9
32,557 - GFF5178 0.63 +0.9
32,697 + GFF5178 0.87 +0.2
32,697 + GFF5178 0.87 -0.2
32,698 - GFF5178 0.87 +0.9
32,698 - GFF5178 0.87 +0.1
32,698 - GFF5178 0.87 +0.8
32,727 + -0.4
32,727 + +0.5
32,728 - -0.7
33,224 + GFF5179 0.80 -0.3
33,224 + GFF5179 0.80 +0.2
33,225 - GFF5179 0.80 -0.2
33,225 - GFF5179 0.80 -1.7
33,225 - GFF5179 0.80 +0.9
33,225 - GFF5179 0.80 -0.9
33,311 + +0.1
33,311 + -0.1
33,311 + -1.5
33,311 + -0.7
33,311 + -0.6
33,312 - -1.5
33,333 - -0.3
33,333 - +0.2
33,333 - +0.7
33,395 + -0.1
33,461 + GFF5180 0.11 +0.1
33,461 + GFF5180 0.11 -0.1
33,461 + GFF5180 0.11 -1.5
33,461 + GFF5180 0.11 +0.3
33,462 - GFF5180 0.12 -1.1
33,462 - GFF5180 0.12 +0.1
33,606 - GFF5180 0.24 +0.9
33,849 - GFF5180 0.46 -0.3
33,849 - GFF5180 0.46 -0.8
33,900 - GFF5180 0.50 -0.4
34,055 + GFF5180 0.64 -1.7
34,055 + GFF5180 0.64 -0.1
34,055 + GFF5180 0.64 -0.5
34,055 + GFF5180 0.64 +0.0
34,055 + GFF5180 0.64 -0.2
34,055 + GFF5180 0.64 -0.7
34,055 + GFF5180 0.64 +1.7
34,055 + GFF5180 0.64 +0.0
34,055 + GFF5180 0.64 +0.3
34,056 - GFF5180 0.64 -1.0
34,056 - GFF5180 0.64 -0.6
34,056 - GFF5180 0.64 +0.5
34,056 - GFF5180 0.64 -1.1
34,056 - GFF5180 0.64 -1.1
34,056 - GFF5180 0.64 -0.2
34,056 - GFF5180 0.64 +1.2
34,056 - GFF5180 0.64 -0.4
34,227 - GFF5180 0.79 -0.7
34,367 + -0.4
34,367 + +0.9
34,368 - +0.5
34,368 - -1.1
34,402 + -0.4
34,402 + -0.9
34,403 - -0.3
34,403 - -0.7
34,609 - GFF5181 0.34 +0.1
34,609 - GFF5181 0.34 -1.2
34,772 + +0.3
34,773 - -0.2
34,905 + -0.5
34,905 + -1.1
34,929 + -0.1
34,949 + +0.2
34,950 - -0.1
35,005 - +1.1
35,005 - +0.2
35,005 - +0.9
35,007 - -0.6
35,027 + -1.7
35,133 + -0.8
35,133 + +0.2
35,134 - +0.1
35,134 - -1.7
35,134 - -0.6
35,134 - -0.3
35,417 + +1.9
35,417 + +0.9
35,418 - +0.2
35,418 - +0.0

Or see this region's nucleotide sequence