Strain Fitness in Variovorax sp. SCN45 around GFF5106

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5105 and GFF5106 are separated by 15 nucleotidesGFF5106 and GFF5107 are separated by 94 nucleotides GFF5105 - Transcriptional regulator, MerR family, at 206,550 to 207,563 GFF5105 GFF5106 - Permease of the drug/metabolite transporter (DMT) superfamily, at 207,579 to 208,523 GFF5106 GFF5107 - Transcriptional regulator, LysR family, at 208,618 to 209,568 GFF5107 GFF5108 - FIG00348319: hypothetical protein, at 209,522 to 210,280 GFF5108 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.631 kb on + strandat 206.631 kb on + strandat 206.632 kb on - strandat 206.632 kb on - strandat 206.632 kb on - strandat 206.685 kb on + strand, within GFF5105at 206.685 kb on + strand, within GFF5105at 206.686 kb on - strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.024 kb on + strand, within GFF5105at 207.025 kb on - strand, within GFF5105at 207.025 kb on - strand, within GFF5105at 207.025 kb on - strand, within GFF5105at 207.025 kb on - strand, within GFF5105at 207.471 kb on + strandat 207.471 kb on + strandat 207.472 kb on - strandat 207.472 kb on - strandat 207.567 kb on - strandat 207.679 kb on + strand, within GFF5106at 207.679 kb on + strand, within GFF5106at 207.679 kb on + strand, within GFF5106at 207.680 kb on - strand, within GFF5106at 207.680 kb on - strand, within GFF5106at 207.805 kb on + strand, within GFF5106at 207.805 kb on + strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 207.806 kb on - strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.402 kb on + strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.403 kb on - strand, within GFF5106at 208.523 kb on + strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.524 kb on - strandat 208.991 kb on - strand, within GFF5107at 209.150 kb on - strand, within GFF5107at 209.150 kb on - strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.405 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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206,631 + -0.3
206,631 + -0.8
206,632 - +0.4
206,632 - -1.2
206,632 - -0.4
206,685 + GFF5105 0.13 +0.4
206,685 + GFF5105 0.13 +0.0
206,686 - GFF5105 0.13 +0.2
207,024 + GFF5105 0.47 +0.3
207,024 + GFF5105 0.47 -0.1
207,024 + GFF5105 0.47 -0.0
207,024 + GFF5105 0.47 -0.4
207,024 + GFF5105 0.47 +1.2
207,024 + GFF5105 0.47 +0.9
207,024 + GFF5105 0.47 +1.0
207,024 + GFF5105 0.47 +0.1
207,024 + GFF5105 0.47 +1.4
207,024 + GFF5105 0.47 +0.1
207,025 - GFF5105 0.47 +1.7
207,025 - GFF5105 0.47 -1.2
207,025 - GFF5105 0.47 -0.9
207,025 - GFF5105 0.47 +0.7
207,471 + +0.9
207,471 + +0.2
207,472 - +0.6
207,472 - -0.5
207,567 - +1.4
207,679 + GFF5106 0.11 +0.4
207,679 + GFF5106 0.11 -0.1
207,679 + GFF5106 0.11 -0.3
207,680 - GFF5106 0.11 -0.6
207,680 - GFF5106 0.11 -0.6
207,805 + GFF5106 0.24 +0.1
207,805 + GFF5106 0.24 +0.5
207,806 - GFF5106 0.24 +0.7
207,806 - GFF5106 0.24 +0.0
207,806 - GFF5106 0.24 -0.6
207,806 - GFF5106 0.24 +0.1
207,806 - GFF5106 0.24 -0.1
208,402 + GFF5106 0.87 -1.1
208,402 + GFF5106 0.87 +0.1
208,402 + GFF5106 0.87 +0.1
208,403 - GFF5106 0.87 +0.5
208,403 - GFF5106 0.87 +0.9
208,403 - GFF5106 0.87 +0.7
208,523 + +3.6
208,524 - +0.0
208,524 - -0.8
208,524 - +1.1
208,524 - -0.2
208,524 - -0.6
208,991 - GFF5107 0.39 -0.9
209,150 - GFF5107 0.56 -0.2
209,150 - GFF5107 0.56 -0.8
209,290 + GFF5107 0.71 -0.1
209,290 + GFF5107 0.71 -1.0
209,290 + GFF5107 0.71 -0.5
209,290 + GFF5107 0.71 +0.1
209,290 + GFF5107 0.71 -2.0
209,290 + GFF5107 0.71 +0.9
209,290 + GFF5107 0.71 -1.2
209,290 + GFF5107 0.71 -0.4
209,290 + GFF5107 0.71 -0.0
209,290 + GFF5107 0.71 -0.3
209,290 + GFF5107 0.71 -1.4
209,290 + GFF5107 0.71 -0.9
209,290 + GFF5107 0.71 +0.6
209,291 - GFF5107 0.71 +0.4
209,291 - GFF5107 0.71 -0.1
209,291 - GFF5107 0.71 +0.1
209,291 - GFF5107 0.71 +1.2
209,291 - GFF5107 0.71 +0.9
209,291 - GFF5107 0.71 -0.1
209,405 + GFF5107 0.83 -0.3
209,434 + GFF5107 0.86 +0.7
209,434 + GFF5107 0.86 -0.3
209,434 + GFF5107 0.86 +0.8
209,435 - GFF5107 0.86 +0.1
209,435 - GFF5107 0.86 +0.6
209,435 - GFF5107 0.86 +0.2
209,435 - GFF5107 0.86 +0.1
209,459 - GFF5107 0.88 +0.9
209,459 - GFF5107 0.88 +0.6

Or see this region's nucleotide sequence