Strain Fitness in Variovorax sp. SCN45 around GFF5081

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5080 and GFF5081 are separated by 15 nucleotidesGFF5081 and GFF5082 are separated by 30 nucleotides GFF5080 - DNA recombination-dependent growth factor RdgC, at 183,112 to 184,122 GFF5080 GFF5081 - Amidohydrolase family protein, at 184,138 to 185,349 GFF5081 GFF5082 - Uncharacterized MFS-type transporter, at 185,380 to 186,693 GFF5082 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 183.140 kb on - strandat 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.736 kb on + strand, within GFF5080at 183.737 kb on - strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.926 kb on - strand, within GFF5080at 183.926 kb on - strand, within GFF5080at 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.439 kb on + strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.930 kb on + strand, within GFF5081at 184.931 kb on - strand, within GFF5081at 185.043 kb on - strand, within GFF5081at 185.172 kb on - strand, within GFF5081at 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.447 kb on + strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.448 kb on - strandat 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.540 kb on + strand, within GFF5082at 185.541 kb on - strand, within GFF5082at 185.541 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.703 kb on - strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.870 kb on + strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.871 kb on - strand, within GFF5082at 185.897 kb on + strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.120 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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183,140 - -0.3
183,313 + GFF5080 0.20 -0.8
183,313 + GFF5080 0.20 -1.6
183,313 + GFF5080 0.20 -0.2
183,313 + GFF5080 0.20 +0.4
183,313 + GFF5080 0.20 -0.1
183,313 + GFF5080 0.20 -0.1
183,313 + GFF5080 0.20 -1.2
183,313 + GFF5080 0.20 -2.0
183,313 + GFF5080 0.20 -1.3
183,314 - GFF5080 0.20 -0.8
183,314 - GFF5080 0.20 -0.6
183,314 - GFF5080 0.20 -1.2
183,314 - GFF5080 0.20 -0.1
183,314 - GFF5080 0.20 -0.8
183,736 + GFF5080 0.62 -1.3
183,737 - GFF5080 0.62 -0.1
183,925 + GFF5080 0.80 +0.2
183,925 + GFF5080 0.80 -0.4
183,925 + GFF5080 0.80 -0.4
183,925 + GFF5080 0.80 -0.2
183,925 + GFF5080 0.80 -0.6
183,926 - GFF5080 0.81 +0.7
183,926 - GFF5080 0.81 +0.8
184,151 + -0.3
184,151 + -0.1
184,151 + +0.9
184,151 + -1.1
184,151 + -0.8
184,151 + -0.6
184,151 + -0.5
184,151 + -1.1
184,152 - -0.2
184,152 - +0.3
184,152 - -1.1
184,152 - -0.4
184,152 - -0.4
184,152 - +0.6
184,274 + GFF5081 0.11 +0.1
184,274 + GFF5081 0.11 +4.4
184,274 + GFF5081 0.11 +0.5
184,274 + GFF5081 0.11 +0.8
184,274 + GFF5081 0.11 -0.4
184,274 + GFF5081 0.11 +0.2
184,274 + GFF5081 0.11 -0.1
184,274 + GFF5081 0.11 -0.1
184,274 + GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 +0.1
184,275 - GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 +0.4
184,275 - GFF5081 0.11 -0.5
184,439 + GFF5081 0.25 -0.3
184,836 - GFF5081 0.58 -1.1
184,836 - GFF5081 0.58 +0.2
184,836 - GFF5081 0.58 -0.9
184,930 + GFF5081 0.65 -1.6
184,931 - GFF5081 0.65 -1.5
185,043 - GFF5081 0.75 -0.1
185,172 - GFF5081 0.85 -0.1
185,447 + -0.4
185,447 + -0.5
185,447 + -1.0
185,447 + +0.4
185,447 + -0.9
185,448 - +0.1
185,448 - +0.9
185,448 - +0.7
185,448 - -1.1
185,448 - +1.1
185,448 - +0.5
185,448 - -0.7
185,448 - -1.5
185,448 - -0.1
185,448 - -1.1
185,448 - -0.5
185,448 - -0.3
185,448 - +0.4
185,540 + GFF5082 0.12 +0.2
185,540 + GFF5082 0.12 -0.5
185,540 + GFF5082 0.12 -0.2
185,540 + GFF5082 0.12 -0.1
185,541 - GFF5082 0.12 -1.5
185,541 - GFF5082 0.12 -0.6
185,703 - GFF5082 0.25 -0.1
185,703 - GFF5082 0.25 -0.2
185,703 - GFF5082 0.25 -0.4
185,870 + GFF5082 0.37 -1.8
185,870 + GFF5082 0.37 +0.5
185,870 + GFF5082 0.37 -0.2
185,870 + GFF5082 0.37 +1.5
185,870 + GFF5082 0.37 +0.6
185,870 + GFF5082 0.37 -0.4
185,870 + GFF5082 0.37 -0.3
185,870 + GFF5082 0.37 +0.2
185,870 + GFF5082 0.37 +0.2
185,870 + GFF5082 0.37 +0.4
185,870 + GFF5082 0.37 -1.1
185,870 + GFF5082 0.37 -1.4
185,870 + GFF5082 0.37 -0.1
185,871 - GFF5082 0.37 +0.9
185,871 - GFF5082 0.37 -0.6
185,871 - GFF5082 0.37 -0.5
185,871 - GFF5082 0.37 +0.6
185,871 - GFF5082 0.37 -0.1
185,871 - GFF5082 0.37 -1.1
185,871 - GFF5082 0.37 +1.4
185,871 - GFF5082 0.37 -0.6
185,871 - GFF5082 0.37 +1.3
185,871 - GFF5082 0.37 -0.6
185,897 + GFF5082 0.39 -0.4
185,898 - GFF5082 0.39 -0.2
185,898 - GFF5082 0.39 -0.2
185,898 - GFF5082 0.39 -0.1
185,898 - GFF5082 0.39 -2.7
185,898 - GFF5082 0.39 +0.4
185,898 - GFF5082 0.39 -0.1
186,028 + GFF5082 0.49 +0.6
186,028 + GFF5082 0.49 -0.1
186,028 + GFF5082 0.49 -0.6
186,028 + GFF5082 0.49 -0.2
186,028 + GFF5082 0.49 +1.1
186,028 + GFF5082 0.49 -0.5
186,028 + GFF5082 0.49 -0.9
186,028 + GFF5082 0.49 -0.5
186,029 - GFF5082 0.49 +0.6
186,029 - GFF5082 0.49 +0.9
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 -0.4
186,029 - GFF5082 0.49 -1.8
186,029 - GFF5082 0.49 +0.7
186,029 - GFF5082 0.49 -0.9
186,029 - GFF5082 0.49 -0.7
186,029 - GFF5082 0.49 -1.2
186,029 - GFF5082 0.49 +0.8
186,029 - GFF5082 0.49 +0.0
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 +0.2
186,029 - GFF5082 0.49 +1.3
186,032 + GFF5082 0.50 +2.3
186,032 + GFF5082 0.50 +1.9
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.3
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.5
186,032 + GFF5082 0.50 -0.2
186,032 + GFF5082 0.50 -0.6
186,032 + GFF5082 0.50 +0.5
186,032 + GFF5082 0.50 -1.1
186,032 + GFF5082 0.50 +0.8
186,032 + GFF5082 0.50 -0.2
186,032 + GFF5082 0.50 +0.1
186,033 - GFF5082 0.50 -0.6
186,033 - GFF5082 0.50 -0.5
186,033 - GFF5082 0.50 -0.4
186,033 - GFF5082 0.50 -0.3
186,033 - GFF5082 0.50 -0.5
186,033 - GFF5082 0.50 -1.7
186,033 - GFF5082 0.50 -0.2
186,120 - GFF5082 0.56 -0.5
186,324 - GFF5082 0.72 -0.2
186,324 - GFF5082 0.72 -0.6
186,324 - GFF5082 0.72 -0.2
186,324 - GFF5082 0.72 -0.3

Or see this region's nucleotide sequence