Strain Fitness in Variovorax sp. SCN45 around GFF5080

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5079 and GFF5080 are separated by 119 nucleotidesGFF5080 and GFF5081 are separated by 15 nucleotides GFF5079 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 182,039 to 182,992 GFF5079 GFF5080 - DNA recombination-dependent growth factor RdgC, at 183,112 to 184,122 GFF5080 GFF5081 - Amidohydrolase family protein, at 184,138 to 185,349 GFF5081 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.436 kb on + strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.536 kb on - strand, within GFF5079at 182.586 kb on + strand, within GFF5079at 182.587 kb on - strand, within GFF5079at 182.587 kb on - strand, within GFF5079at 182.685 kb on + strand, within GFF5079at 182.685 kb on + strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.760 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 183.120 kb on - strandat 183.140 kb on - strandat 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.313 kb on + strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.314 kb on - strand, within GFF5080at 183.736 kb on + strand, within GFF5080at 183.737 kb on - strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.925 kb on + strand, within GFF5080at 183.926 kb on - strand, within GFF5080at 183.926 kb on - strand, within GFF5080at 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.151 kb on + strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.152 kb on - strandat 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.274 kb on + strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.275 kb on - strand, within GFF5081at 184.439 kb on + strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.836 kb on - strand, within GFF5081at 184.930 kb on + strand, within GFF5081at 184.931 kb on - strand, within GFF5081at 185.043 kb on - strand, within GFF5081

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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182,232 + GFF5079 0.20 +0.4
182,232 + GFF5079 0.20 -0.1
182,232 + GFF5079 0.20 -0.3
182,232 + GFF5079 0.20 +0.1
182,232 + GFF5079 0.20 -1.2
182,232 + GFF5079 0.20 +0.6
182,232 + GFF5079 0.20 +1.5
182,232 + GFF5079 0.20 -0.6
182,233 - GFF5079 0.20 -0.3
182,233 - GFF5079 0.20 +1.1
182,233 - GFF5079 0.20 -0.0
182,233 - GFF5079 0.20 -0.4
182,233 - GFF5079 0.20 -0.1
182,233 - GFF5079 0.20 -1.0
182,233 - GFF5079 0.20 -2.0
182,233 - GFF5079 0.20 +0.4
182,233 - GFF5079 0.20 +0.1
182,349 + GFF5079 0.32 +4.4
182,349 + GFF5079 0.32 +0.7
182,349 + GFF5079 0.32 -0.1
182,350 - GFF5079 0.33 -0.8
182,350 - GFF5079 0.33 -0.6
182,350 - GFF5079 0.33 +2.9
182,436 + GFF5079 0.42 -0.4
182,437 - GFF5079 0.42 +0.8
182,437 - GFF5079 0.42 -0.5
182,437 - GFF5079 0.42 +0.1
182,481 + GFF5079 0.46 -0.6
182,481 + GFF5079 0.46 -0.3
182,481 + GFF5079 0.46 -1.5
182,481 + GFF5079 0.46 -1.1
182,481 + GFF5079 0.46 -1.4
182,481 + GFF5079 0.46 -0.4
182,481 + GFF5079 0.46 +1.9
182,481 + GFF5079 0.46 -1.1
182,481 + GFF5079 0.46 -0.9
182,482 - GFF5079 0.46 +0.6
182,482 - GFF5079 0.46 -0.3
182,482 - GFF5079 0.46 +4.5
182,482 - GFF5079 0.46 -0.7
182,482 - GFF5079 0.46 -0.2
182,482 - GFF5079 0.46 -0.1
182,482 - GFF5079 0.46 -0.4
182,482 - GFF5079 0.46 -0.3
182,482 - GFF5079 0.46 -0.6
182,535 + GFF5079 0.52 -0.1
182,535 + GFF5079 0.52 -0.5
182,535 + GFF5079 0.52 +0.3
182,536 - GFF5079 0.52 +0.0
182,586 + GFF5079 0.57 +1.4
182,587 - GFF5079 0.57 -0.1
182,587 - GFF5079 0.57 -0.2
182,685 + GFF5079 0.68 +0.3
182,685 + GFF5079 0.68 +1.5
182,686 - GFF5079 0.68 -0.5
182,686 - GFF5079 0.68 -0.5
182,686 - GFF5079 0.68 -0.4
182,686 - GFF5079 0.68 -0.8
182,760 + GFF5079 0.76 -2.1
182,847 + GFF5079 0.85 +0.9
182,847 + GFF5079 0.85 -0.4
182,847 + GFF5079 0.85 +0.2
182,847 + GFF5079 0.85 +0.2
182,847 + GFF5079 0.85 +1.1
183,120 - +0.0
183,140 - -0.3
183,313 + GFF5080 0.20 -0.8
183,313 + GFF5080 0.20 -1.6
183,313 + GFF5080 0.20 -0.2
183,313 + GFF5080 0.20 +0.4
183,313 + GFF5080 0.20 -0.1
183,313 + GFF5080 0.20 -0.1
183,313 + GFF5080 0.20 -1.2
183,313 + GFF5080 0.20 -2.0
183,313 + GFF5080 0.20 -1.3
183,314 - GFF5080 0.20 -0.8
183,314 - GFF5080 0.20 -0.6
183,314 - GFF5080 0.20 -1.2
183,314 - GFF5080 0.20 -0.1
183,314 - GFF5080 0.20 -0.8
183,736 + GFF5080 0.62 -1.3
183,737 - GFF5080 0.62 -0.1
183,925 + GFF5080 0.80 +0.2
183,925 + GFF5080 0.80 -0.4
183,925 + GFF5080 0.80 -0.4
183,925 + GFF5080 0.80 -0.2
183,925 + GFF5080 0.80 -0.6
183,926 - GFF5080 0.81 +0.7
183,926 - GFF5080 0.81 +0.8
184,151 + -0.3
184,151 + -0.1
184,151 + +0.9
184,151 + -1.1
184,151 + -0.8
184,151 + -0.6
184,151 + -0.5
184,151 + -1.1
184,152 - -0.2
184,152 - +0.3
184,152 - -1.1
184,152 - -0.4
184,152 - -0.4
184,152 - +0.6
184,274 + GFF5081 0.11 +0.1
184,274 + GFF5081 0.11 +4.4
184,274 + GFF5081 0.11 +0.5
184,274 + GFF5081 0.11 +0.8
184,274 + GFF5081 0.11 -0.4
184,274 + GFF5081 0.11 +0.2
184,274 + GFF5081 0.11 -0.1
184,274 + GFF5081 0.11 -0.1
184,274 + GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 +0.1
184,275 - GFF5081 0.11 -1.1
184,275 - GFF5081 0.11 +0.4
184,275 - GFF5081 0.11 -0.5
184,439 + GFF5081 0.25 -0.3
184,836 - GFF5081 0.58 -1.1
184,836 - GFF5081 0.58 +0.2
184,836 - GFF5081 0.58 -0.9
184,930 + GFF5081 0.65 -1.6
184,931 - GFF5081 0.65 -1.5
185,043 - GFF5081 0.75 -0.1

Or see this region's nucleotide sequence