Strain Fitness in Variovorax sp. SCN45 around GFF5072

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5071 and GFF5072 are separated by 95 nucleotidesGFF5072 and GFF5073 overlap by 4 nucleotidesGFF5073 and GFF5074 are separated by 162 nucleotides GFF5071 - AmpG permease, at 173,165 to 174,532 GFF5071 GFF5072 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 174,628 to 175,854 GFF5072 GFF5073 - 3-oxoacyl-[ACP] synthase, at 175,851 to 176,690 GFF5073 GFF5074 - Two-component transcriptional response regulator Dtpsy_0213, OmpR family, at 176,853 to 177,575 GFF5074 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2 3at 173.661 kb on - strand, within GFF5071at 173.768 kb on + strand, within GFF5071at 173.769 kb on - strand, within GFF5071at 173.796 kb on - strand, within GFF5071at 173.796 kb on - strand, within GFF5071at 173.796 kb on - strand, within GFF5071at 173.796 kb on - strand, within GFF5071at 173.796 kb on - strand, within GFF5071at 173.945 kb on + strand, within GFF5071at 173.945 kb on + strand, within GFF5071at 173.945 kb on + strand, within GFF5071at 173.987 kb on + strand, within GFF5071at 173.987 kb on + strand, within GFF5071at 173.987 kb on + strand, within GFF5071at 173.987 kb on + strand, within GFF5071at 173.987 kb on + strand, within GFF5071at 173.988 kb on - strand, within GFF5071at 173.988 kb on - strand, within GFF5071at 173.988 kb on - strand, within GFF5071at 173.988 kb on - strand, within GFF5071at 174.032 kb on + strand, within GFF5071at 174.032 kb on + strand, within GFF5071at 174.032 kb on + strand, within GFF5071at 174.032 kb on + strand, within GFF5071at 174.033 kb on - strand, within GFF5071at 174.083 kb on + strand, within GFF5071at 174.083 kb on + strand, within GFF5071at 174.083 kb on + strand, within GFF5071at 174.083 kb on + strand, within GFF5071at 174.083 kb on + strand, within GFF5071at 174.084 kb on - strand, within GFF5071at 174.084 kb on - strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.200 kb on + strand, within GFF5071at 174.201 kb on - strand, within GFF5071at 174.201 kb on - strand, within GFF5071at 174.201 kb on - strand, within GFF5071at 174.302 kb on + strand, within GFF5071at 174.303 kb on - strand, within GFF5071at 174.303 kb on - strand, within GFF5071at 174.329 kb on + strand, within GFF5071at 174.329 kb on + strand, within GFF5071at 174.329 kb on + strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.330 kb on - strand, within GFF5071at 174.344 kb on + strand, within GFF5071at 174.345 kb on - strand, within GFF5071at 174.345 kb on - strand, within GFF5071at 174.420 kb on - strandat 174.425 kb on + strandat 174.426 kb on - strandat 174.426 kb on - strandat 174.531 kb on - strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.546 kb on + strandat 174.547 kb on - strandat 174.547 kb on - strandat 174.547 kb on - strandat 174.547 kb on - strandat 174.547 kb on - strandat 174.583 kb on + strandat 174.583 kb on + strandat 174.599 kb on + strandat 174.599 kb on + strandat 174.599 kb on + strandat 174.599 kb on + strandat 174.600 kb on - strandat 174.600 kb on - strandat 174.600 kb on - strandat 174.600 kb on - strandat 174.674 kb on + strandat 174.674 kb on + strandat 174.675 kb on - strandat 174.675 kb on - strandat 174.940 kb on + strand, within GFF5072at 174.940 kb on + strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 175.009 kb on + strand, within GFF5072at 175.009 kb on + strand, within GFF5072at 175.010 kb on - strand, within GFF5072at 175.010 kb on - strand, within GFF5072at 175.405 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.787 kb on - strandat 175.787 kb on - strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.891 kb on - strandat 175.891 kb on - strandat 175.891 kb on - strandat 175.891 kb on - strandat 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.373 kb on + strand, within GFF5073at 176.373 kb on + strand, within GFF5073at 176.374 kb on - strand, within GFF5073at 176.761 kb on - strandat 176.804 kb on + strandat 176.805 kb on - strandat 176.815 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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173,661 - GFF5071 0.36 +0.5
173,768 + GFF5071 0.44 -0.4
173,769 - GFF5071 0.44 +0.6
173,796 - GFF5071 0.46 +0.7
173,796 - GFF5071 0.46 -0.1
173,796 - GFF5071 0.46 +1.2
173,796 - GFF5071 0.46 +0.7
173,796 - GFF5071 0.46 +0.5
173,945 + GFF5071 0.57 +0.1
173,945 + GFF5071 0.57 -0.2
173,945 + GFF5071 0.57 +0.1
173,987 + GFF5071 0.60 +0.3
173,987 + GFF5071 0.60 -0.2
173,987 + GFF5071 0.60 -0.0
173,987 + GFF5071 0.60 -0.4
173,987 + GFF5071 0.60 +0.1
173,988 - GFF5071 0.60 +0.4
173,988 - GFF5071 0.60 +1.2
173,988 - GFF5071 0.60 +0.1
173,988 - GFF5071 0.60 +2.4
174,032 + GFF5071 0.63 +1.6
174,032 + GFF5071 0.63 -0.5
174,032 + GFF5071 0.63 -0.1
174,032 + GFF5071 0.63 +0.1
174,033 - GFF5071 0.63 +0.6
174,083 + GFF5071 0.67 -0.1
174,083 + GFF5071 0.67 +1.4
174,083 + GFF5071 0.67 +0.4
174,083 + GFF5071 0.67 +2.9
174,083 + GFF5071 0.67 -0.0
174,084 - GFF5071 0.67 +1.5
174,084 - GFF5071 0.67 +0.5
174,200 + GFF5071 0.76 +0.9
174,200 + GFF5071 0.76 -0.1
174,200 + GFF5071 0.76 +0.3
174,200 + GFF5071 0.76 -0.3
174,200 + GFF5071 0.76 +0.1
174,200 + GFF5071 0.76 +0.2
174,200 + GFF5071 0.76 -0.0
174,200 + GFF5071 0.76 +1.1
174,201 - GFF5071 0.76 +0.0
174,201 - GFF5071 0.76 +1.9
174,201 - GFF5071 0.76 -0.2
174,302 + GFF5071 0.83 +0.6
174,303 - GFF5071 0.83 -0.1
174,303 - GFF5071 0.83 -0.7
174,329 + GFF5071 0.85 -0.6
174,329 + GFF5071 0.85 +0.3
174,329 + GFF5071 0.85 +0.8
174,330 - GFF5071 0.85 -0.0
174,330 - GFF5071 0.85 +0.2
174,330 - GFF5071 0.85 +0.4
174,330 - GFF5071 0.85 +0.8
174,330 - GFF5071 0.85 +0.2
174,330 - GFF5071 0.85 +1.2
174,330 - GFF5071 0.85 +0.3
174,330 - GFF5071 0.85 +0.3
174,344 + GFF5071 0.86 -0.1
174,345 - GFF5071 0.86 -2.0
174,345 - GFF5071 0.86 -0.6
174,420 - +0.9
174,425 + +0.4
174,426 - +0.5
174,426 - +0.1
174,531 - +0.6
174,546 + -0.9
174,546 + -1.8
174,546 + +0.2
174,546 + +0.1
174,546 + -0.1
174,546 + -0.1
174,546 + -1.6
174,546 + +0.8
174,547 - -0.1
174,547 - -0.8
174,547 - -0.1
174,547 - -0.6
174,547 - -0.2
174,583 + -0.8
174,583 + +0.2
174,599 + -0.9
174,599 + +0.2
174,599 + +0.0
174,599 + -0.3
174,600 - +0.8
174,600 - -0.5
174,600 - -0.2
174,600 - +0.8
174,674 + +0.2
174,674 + +0.4
174,675 - -0.0
174,675 - -1.5
174,940 + GFF5072 0.25 -1.4
174,940 + GFF5072 0.25 -1.4
174,941 - GFF5072 0.26 -0.1
174,941 - GFF5072 0.26 -0.4
174,941 - GFF5072 0.26 +0.4
174,941 - GFF5072 0.26 -0.2
175,009 + GFF5072 0.31 +0.4
175,009 + GFF5072 0.31 -1.8
175,010 - GFF5072 0.31 +0.2
175,010 - GFF5072 0.31 -0.9
175,405 + GFF5072 0.63 -0.3
175,522 + GFF5072 0.73 -0.8
175,522 + GFF5072 0.73 -0.4
175,522 + GFF5072 0.73 -0.1
175,522 + GFF5072 0.73 -0.5
175,523 - GFF5072 0.73 -0.2
175,523 - GFF5072 0.73 -0.4
175,523 - GFF5072 0.73 -0.3
175,523 - GFF5072 0.73 -0.5
175,523 - GFF5072 0.73 +1.9
175,523 - GFF5072 0.73 -0.3
175,523 - GFF5072 0.73 -0.2
175,523 - GFF5072 0.73 +0.4
175,523 - GFF5072 0.73 -0.9
175,787 - +0.1
175,787 - +0.9
175,890 + -1.0
175,890 + +1.2
175,890 + -0.8
175,890 + +0.4
175,890 + +0.1
175,890 + -0.7
175,891 - -0.6
175,891 - -0.5
175,891 - -0.0
175,891 - -0.4
176,157 + GFF5073 0.36 +0.6
176,157 + GFF5073 0.36 -1.5
176,157 + GFF5073 0.36 -0.9
176,157 + GFF5073 0.36 +0.1
176,157 + GFF5073 0.36 +0.1
176,157 + GFF5073 0.36 -0.4
176,157 + GFF5073 0.36 +0.5
176,157 + GFF5073 0.36 +1.4
176,157 + GFF5073 0.36 +0.7
176,158 - GFF5073 0.37 -1.1
176,158 - GFF5073 0.37 +0.6
176,158 - GFF5073 0.37 -0.8
176,158 - GFF5073 0.37 -0.4
176,158 - GFF5073 0.37 +0.4
176,158 - GFF5073 0.37 +0.7
176,158 - GFF5073 0.37 +0.2
176,158 - GFF5073 0.37 -1.0
176,158 - GFF5073 0.37 -0.2
176,158 - GFF5073 0.37 -0.5
176,158 - GFF5073 0.37 +0.9
176,158 - GFF5073 0.37 +0.2
176,158 - GFF5073 0.37 -1.4
176,241 + GFF5073 0.46 -1.1
176,241 + GFF5073 0.46 -1.4
176,241 + GFF5073 0.46 -0.9
176,373 + GFF5073 0.62 -0.3
176,373 + GFF5073 0.62 -0.1
176,374 - GFF5073 0.62 -1.4
176,761 - +0.5
176,804 + +0.7
176,805 - +0.8
176,815 - -0.3

Or see this region's nucleotide sequence