Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5054 and GFF5055 overlap by 4 nucleotides GFF5055 and GFF5056 are separated by 22 nucleotides GFF5056 and GFF5057 are separated by 128 nucleotides
GFF5054 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 154,809 to 156,119
GFF5054
GFF5055 - BUG/TctC family periplasmic protein, at 156,116 to 157,090
GFF5055
GFF5056 - Fumarylacetoacetase (EC 3.7.1.2), at 157,113 to 158,378
GFF5056
GFF5057 - Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4), at 158,507 to 160,480
GFF5057
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.198 kb on - strand at 156.198 kb on - strand at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.581 kb on + strand, within GFF5055 at 156.581 kb on + strand, within GFF5055 at 156.582 kb on - strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.755 kb on - strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 157.040 kb on + strand at 157.040 kb on + strand at 157.040 kb on + strand at 157.041 kb on - strand at 157.041 kb on - strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.109 kb on - strand at 157.109 kb on - strand at 157.109 kb on - strand at 157.476 kb on + strand, within GFF5056 at 157.476 kb on + strand, within GFF5056 at 157.476 kb on + strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.696 kb on - strand, within GFF5056 at 157.696 kb on - strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 158.100 kb on + strand, within GFF5056 at 158.100 kb on + strand, within GFF5056 at 158.101 kb on - strand, within GFF5056 at 158.371 kb on + strand at 158.371 kb on + strand at 158.371 kb on + strand at 158.372 kb on - strand at 158.508 kb on + strand at 158.508 kb on + strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.653 kb on - strand at 158.653 kb on - strand at 158.653 kb on - strand at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.899 kb on + strand, within GFF5057 at 158.958 kb on + strand, within GFF5057 at 158.959 kb on - strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.316 kb on - strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 156,198 - -1.6 156,198 - +0.6 156,230 + GFF5055 0.12 -0.2 156,230 + GFF5055 0.12 +0.0 156,230 + GFF5055 0.12 -1.1 156,230 + GFF5055 0.12 -0.6 156,230 + GFF5055 0.12 -0.0 156,230 + GFF5055 0.12 -0.3 156,231 - GFF5055 0.12 -0.1 156,231 - GFF5055 0.12 -2.6 156,231 - GFF5055 0.12 +0.4 156,231 - GFF5055 0.12 -0.2 156,380 + GFF5055 0.27 -1.2 156,380 + GFF5055 0.27 +0.3 156,380 + GFF5055 0.27 -0.5 156,381 - GFF5055 0.27 -0.8 156,381 - GFF5055 0.27 -0.6 156,381 - GFF5055 0.27 +0.7 156,381 - GFF5055 0.27 -0.6 156,381 - GFF5055 0.27 -1.0 156,381 - GFF5055 0.27 -0.5 156,431 + GFF5055 0.32 -1.1 156,431 + GFF5055 0.32 -0.1 156,431 + GFF5055 0.32 +0.9 156,431 + GFF5055 0.32 -1.5 156,431 + GFF5055 0.32 -0.5 156,431 + GFF5055 0.32 -0.8 156,431 + GFF5055 0.32 +1.5 156,431 + GFF5055 0.32 +0.8 156,432 - GFF5055 0.32 +0.4 156,432 - GFF5055 0.32 -0.3 156,432 - GFF5055 0.32 +1.9 156,432 - GFF5055 0.32 -0.1 156,432 - GFF5055 0.32 +0.2 156,432 - GFF5055 0.32 -1.3 156,432 - GFF5055 0.32 +0.0 156,432 - GFF5055 0.32 -0.5 156,581 + GFF5055 0.48 -0.4 156,581 + GFF5055 0.48 -2.3 156,582 - GFF5055 0.48 -0.1 156,668 + GFF5055 0.57 -0.6 156,668 + GFF5055 0.57 +0.4 156,668 + GFF5055 0.57 -0.1 156,668 + GFF5055 0.57 +0.8 156,668 + GFF5055 0.57 -1.1 156,668 + GFF5055 0.57 +0.7 156,668 + GFF5055 0.57 +1.2 156,668 + GFF5055 0.57 +1.4 156,669 - GFF5055 0.57 +0.1 156,669 - GFF5055 0.57 -0.8 156,669 - GFF5055 0.57 -1.4 156,669 - GFF5055 0.57 -0.6 156,669 - GFF5055 0.57 -1.7 156,755 - GFF5055 0.66 +0.2 156,881 + GFF5055 0.78 +0.3 156,881 + GFF5055 0.78 -0.2 156,881 + GFF5055 0.78 -0.2 156,882 - GFF5055 0.79 -0.1 156,882 - GFF5055 0.79 -0.5 156,882 - GFF5055 0.79 -0.6 156,882 - GFF5055 0.79 -0.4 157,040 + -0.5 157,040 + -0.9 157,040 + -0.6 157,041 - -0.2 157,041 - +0.6 157,108 + -0.8 157,108 + +1.4 157,108 + +0.4 157,108 + -1.0 157,108 + -0.5 157,108 + -0.4 157,108 + -1.1 157,109 - -0.1 157,109 - +0.8 157,109 - +0.2 157,476 + GFF5056 0.29 +0.4 157,476 + GFF5056 0.29 -0.9 157,476 + GFF5056 0.29 -0.0 157,477 - GFF5056 0.29 -0.4 157,477 - GFF5056 0.29 -0.4 157,477 - GFF5056 0.29 -0.4 157,477 - GFF5056 0.29 +0.2 157,477 - GFF5056 0.29 -2.0 157,477 - GFF5056 0.29 -1.5 157,488 + GFF5056 0.30 +0.4 157,488 + GFF5056 0.30 -0.1 157,488 + GFF5056 0.30 -0.6 157,489 - GFF5056 0.30 -1.9 157,489 - GFF5056 0.30 -2.6 157,489 - GFF5056 0.30 -1.2 157,489 - GFF5056 0.30 +1.5 157,489 - GFF5056 0.30 -0.1 157,489 - GFF5056 0.30 -0.4 157,489 - GFF5056 0.30 -0.9 157,557 + GFF5056 0.35 -1.8 157,557 + GFF5056 0.35 +0.1 157,557 + GFF5056 0.35 -1.8 157,557 + GFF5056 0.35 -0.4 157,557 + GFF5056 0.35 -0.2 157,557 + GFF5056 0.35 +1.9 157,557 + GFF5056 0.35 +0.4 157,558 - GFF5056 0.35 -0.3 157,558 - GFF5056 0.35 -0.2 157,558 - GFF5056 0.35 -0.1 157,558 - GFF5056 0.35 +0.9 157,558 - GFF5056 0.35 -2.4 157,558 - GFF5056 0.35 -0.4 157,558 - GFF5056 0.35 +0.1 157,558 - GFF5056 0.35 -0.3 157,558 - GFF5056 0.35 -0.7 157,558 - GFF5056 0.35 -0.4 157,558 - GFF5056 0.35 -0.4 157,558 - GFF5056 0.35 +1.6 157,558 - GFF5056 0.35 -1.4 157,558 - GFF5056 0.35 -0.9 157,558 - GFF5056 0.35 -0.6 157,558 - GFF5056 0.35 -0.1 157,558 - GFF5056 0.35 +0.2 157,558 - GFF5056 0.35 +0.3 157,695 + GFF5056 0.46 -1.5 157,695 + GFF5056 0.46 +1.5 157,695 + GFF5056 0.46 -1.9 157,695 + GFF5056 0.46 -1.1 157,696 - GFF5056 0.46 +1.5 157,696 - GFF5056 0.46 -0.1 157,833 + GFF5056 0.57 +0.2 157,833 + GFF5056 0.57 -0.5 157,833 + GFF5056 0.57 +0.3 157,834 - GFF5056 0.57 -0.9 157,834 - GFF5056 0.57 -2.3 157,834 - GFF5056 0.57 -0.2 158,100 + GFF5056 0.78 +0.2 158,100 + GFF5056 0.78 +0.0 158,101 - GFF5056 0.78 -0.4 158,371 + -0.4 158,371 + +1.6 158,371 + -0.3 158,372 - -0.1 158,508 + -1.5 158,508 + -0.1 158,509 - +0.9 158,509 - -0.8 158,509 - -0.4 158,509 - +0.2 158,518 + -0.5 158,518 + +0.4 158,518 + -0.2 158,518 + +0.6 158,518 + +0.3 158,518 + -0.6 158,518 + -0.2 158,519 - -0.5 158,519 - -0.3 158,519 - +0.3 158,519 - +0.9 158,519 - -0.1 158,653 - -1.1 158,653 - +0.1 158,653 - -0.8 158,808 + GFF5057 0.15 -0.2 158,808 + GFF5057 0.15 +0.0 158,808 + GFF5057 0.15 +0.4 158,808 + GFF5057 0.15 -0.3 158,808 + GFF5057 0.15 -1.1 158,808 + GFF5057 0.15 +0.5 158,808 + GFF5057 0.15 -0.2 158,808 + GFF5057 0.15 -0.7 158,808 + GFF5057 0.15 -0.9 158,808 + GFF5057 0.15 -0.6 158,808 + GFF5057 0.15 -1.4 158,808 + GFF5057 0.15 +0.2 158,808 + GFF5057 0.15 +0.7 158,809 - GFF5057 0.15 -3.0 158,809 - GFF5057 0.15 -0.7 158,809 - GFF5057 0.15 -0.9 158,809 - GFF5057 0.15 +0.3 158,809 - GFF5057 0.15 -1.4 158,809 - GFF5057 0.15 -0.8 158,809 - GFF5057 0.15 +0.1 158,809 - GFF5057 0.15 -0.8 158,809 - GFF5057 0.15 -0.4 158,809 - GFF5057 0.15 -0.1 158,809 - GFF5057 0.15 -0.3 158,809 - GFF5057 0.15 -2.1 158,809 - GFF5057 0.15 +0.1 158,809 - GFF5057 0.15 -1.0 158,809 - GFF5057 0.15 -0.7 158,809 - GFF5057 0.15 -0.7 158,809 - GFF5057 0.15 -0.3 158,869 - GFF5057 0.18 -0.6 158,869 - GFF5057 0.18 -0.8 158,869 - GFF5057 0.18 -1.4 158,899 + GFF5057 0.20 -0.9 158,958 + GFF5057 0.23 -0.8 158,959 - GFF5057 0.23 -0.5 159,111 + GFF5057 0.31 +0.1 159,111 + GFF5057 0.31 +0.1 159,111 + GFF5057 0.31 -0.6 159,111 + GFF5057 0.31 +0.1 159,111 + GFF5057 0.31 -0.9 159,111 + GFF5057 0.31 -0.3 159,111 + GFF5057 0.31 -1.6 159,112 - GFF5057 0.31 -0.6 159,112 - GFF5057 0.31 -0.6 159,112 - GFF5057 0.31 -0.2 159,112 - GFF5057 0.31 +0.1 159,112 - GFF5057 0.31 -1.9 159,112 - GFF5057 0.31 -0.5 159,112 - GFF5057 0.31 +0.9 159,112 - GFF5057 0.31 -1.1 159,112 - GFF5057 0.31 -0.3 159,150 + GFF5057 0.33 -0.1 159,150 + GFF5057 0.33 -0.7 159,150 + GFF5057 0.33 +0.5 159,150 + GFF5057 0.33 -1.5 159,151 - GFF5057 0.33 -0.3 159,151 - GFF5057 0.33 -0.2 159,151 - GFF5057 0.33 -0.9 159,151 - GFF5057 0.33 +0.9 159,177 + GFF5057 0.34 -0.5 159,177 + GFF5057 0.34 -0.2 159,177 + GFF5057 0.34 -0.8 159,177 + GFF5057 0.34 -1.8 159,178 - GFF5057 0.34 -0.9 159,178 - GFF5057 0.34 -0.8 159,178 - GFF5057 0.34 -2.4 159,178 - GFF5057 0.34 -0.7 159,178 - GFF5057 0.34 -1.6 159,316 - GFF5057 0.41 -0.6 159,321 + GFF5057 0.41 -0.4 159,321 + GFF5057 0.41 -1.1 159,321 + GFF5057 0.41 -1.1 159,321 + GFF5057 0.41 +1.5 159,321 + GFF5057 0.41 -0.7 159,321 + GFF5057 0.41 -1.1 159,321 + GFF5057 0.41 -0.7 159,321 + GFF5057 0.41 -1.8 159,321 + GFF5057 0.41 -0.8 159,321 + GFF5057 0.41 -1.4 159,321 + GFF5057 0.41 +0.2 159,321 + GFF5057 0.41 -0.8 159,321 + GFF5057 0.41 +1.4 159,321 + GFF5057 0.41 -0.8 159,321 + GFF5057 0.41 -0.9 159,321 + GFF5057 0.41 -0.3 159,322 - GFF5057 0.41 +0.9 159,322 - GFF5057 0.41 -0.1 159,322 - GFF5057 0.41 -1.5 159,322 - GFF5057 0.41 +0.7 159,322 - GFF5057 0.41 -1.1 159,322 - GFF5057 0.41 -0.7 159,322 - GFF5057 0.41 -0.1 159,322 - GFF5057 0.41 -2.4 159,322 - GFF5057 0.41 -0.6 159,322 - GFF5057 0.41 -1.2 159,322 - GFF5057 0.41 +0.2 159,322 - GFF5057 0.41 +0.2 159,322 - GFF5057 0.41 -0.1
Or see this region's nucleotide sequence