Strain Fitness in Variovorax sp. SCN45 around GFF5050

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
149,851	+				+0.7
149,852	-				+0.5
149,852	-				+3.8
149,891	+				+0.5
149,891	+				-0.1
149,892	-				+0.2
149,892	-				-0.2
149,893	+				+2.2
149,893	+				-1.7
149,893	+				-0.2
149,893	+				-0.4
149,893	+				-0.1
149,893	+				-1.2
149,893	+				+1.5
149,893	+				-0.4
149,893	+				-0.2
149,893	+				+0.5
149,894	-				-0.1
149,894	-				+0.9
149,894	-				+0.3
149,894	-				+0.6
149,894	-				-1.9
149,894	-				-0.7
149,917	-				-1.0
149,947	+				-0.6
149,947	+				-0.4
149,947	+				-0.5
149,947	+				-0.5
149,947	+				-0.1
149,947	+				+0.5
149,948	-				-0.2
149,948	-				-0.6
149,948	-				-0.5
149,948	-				+0.9
149,948	-				-0.3
149,948	-				-0.4
149,948	-				-0.0
149,948	-				+0.2
149,948	-				+0.6
149,959	+				-0.2
149,959	+				-1.2
149,959	+				-0.1
149,960	-				-1.4
150,003	+				+0.6
150,003	+				-0.5
150,003	+				-0.2
150,003	+				-0.1
150,003	+				+0.4
150,004	-				+0.8
150,004	-				-0.1
150,004	-				-0.4
150,004	-				-0.1
150,004	-				-0.4
150,653	-		GFF5049	0.82	-1.1
150,653	-		GFF5049	0.82	+0.9
150,741	+				-0.2
150,741	+				-0.4
150,741	+				-0.5
150,741	+				+0.9
150,741	+				+0.9
150,741	+				+1.9
150,742	-				-0.1
150,742	-				+0.2
150,742	-				-0.3
150,742	-				+0.5
150,742	-				-0.2
150,742	-				-0.4
150,742	-				-0.3
151,182	+		GFF5050	0.46	-0.2
151,182	+		GFF5050	0.46	-1.2
151,182	+		GFF5050	0.46	-0.8
151,182	+		GFF5050	0.46	+0.6
151,182	+		GFF5050	0.46	-0.0
151,182	+		GFF5050	0.46	-0.1
151,182	+		GFF5050	0.46	-2.1
151,182	+		GFF5050	0.46	-1.5
151,182	+		GFF5050	0.46	+0.1
151,183	-		GFF5050	0.47	-0.6
151,183	-		GFF5050	0.47	+0.8
151,183	-		GFF5050	0.47	-0.1
151,183	-		GFF5050	0.47	-1.1
151,183	-		GFF5050	0.47	-0.6
151,183	-		GFF5050	0.47	-0.8
151,324	+		GFF5050	0.63	-1.3
151,324	+		GFF5050	0.63	-1.5
151,324	+		GFF5050	0.63	-1.7
151,324	+		GFF5050	0.63	-0.4
151,434	+		GFF5050	0.76	+0.7
151,434	+		GFF5050	0.76	+1.7
151,434	+		GFF5050	0.76	-0.1
151,434	+		GFF5050	0.76	+1.9
151,435	-		GFF5050	0.76	+0.0
151,435	-		GFF5050	0.76	-0.5
151,435	-		GFF5050	0.76	-0.6
151,435	-		GFF5050	0.76	+0.8
151,435	-		GFF5050	0.76	+0.7
151,491	+		GFF5050	0.82	+0.4
151,491	+		GFF5050	0.82	-0.4
151,491	+		GFF5050	0.82	-1.4
151,491	+		GFF5050	0.82	-0.6
151,491	+		GFF5050	0.82	-0.7
151,491	+		GFF5050	0.82	-0.5
151,491	+		GFF5050	0.82	-0.8
151,491	+		GFF5050	0.82	-0.2
151,491	+		GFF5050	0.82	-0.4
151,492	-		GFF5050	0.82	-0.5
151,492	-		GFF5050	0.82	-0.0
151,492	-		GFF5050	0.82	+0.1
151,492	-		GFF5050	0.82	-0.2
151,492	-		GFF5050	0.82	-0.9
151,492	-		GFF5050	0.82	+1.2
151,492	-		GFF5050	0.82	-0.6
151,492	-		GFF5050	0.82	-2.6
151,492	-		GFF5050	0.82	-0.6
151,492	-		GFF5050	0.82	-0.5
151,492	-		GFF5050	0.82	+1.1
151,492	-		GFF5050	0.82	-0.4
151,685	+				-0.2
151,685	+				-0.4
151,685	+				+1.9
151,685	+				-1.4
151,686	-				-0.6
151,686	-				-0.2
151,692	+				-1.1
151,708	+				-0.4
151,708	+				-1.5
151,708	+				-0.9
151,708	+				+0.5
151,709	-				+0.1
151,875	+				-0.5
151,875	+				+0.1
151,875	+				-0.2
151,875	+				-0.5
151,875	+				-0.7
151,875	+				-0.2
151,875	+				-0.8
151,876	-				-0.5
152,013	+		GFF5051	0.23	-1.6
152,013	+		GFF5051	0.23	-0.3
152,013	+		GFF5051	0.23	+0.2
152,013	+		GFF5051	0.23	+1.1
152,013	+		GFF5051	0.23	-0.8
152,013	+		GFF5051	0.23	-0.2
152,013	+		GFF5051	0.23	+0.1
152,013	+		GFF5051	0.23	-0.1
152,013	+		GFF5051	0.23	-1.1
152,013	+		GFF5051	0.23	-0.4
152,014	-		GFF5051	0.24	+0.6
152,014	-		GFF5051	0.24	+0.1
152,014	-		GFF5051	0.24	+0.1
152,014	-		GFF5051	0.24	-2.1
152,014	-		GFF5051	0.24	-0.6
152,014	-		GFF5051	0.24	-0.3
152,014	-		GFF5051	0.24	+0.0
152,014	-		GFF5051	0.24	-0.1
152,031	+		GFF5051	0.25	+0.9
152,031	+		GFF5051	0.25	-0.7
152,031	+		GFF5051	0.25	+0.2
152,032	-		GFF5051	0.25	+0.2
152,032	-		GFF5051	0.25	-0.4
152,032	-		GFF5051	0.25	-1.5
152,368	-		GFF5051	0.60	-0.6
152,382	+		GFF5051	0.62	-0.8
152,382	+		GFF5051	0.62	-0.6
152,383	-		GFF5051	0.62	-0.6
152,383	-		GFF5051	0.62	-1.7
152,526	+		GFF5051	0.77	+0.1
152,526	+		GFF5051	0.77	+0.1
152,526	+		GFF5051	0.77	-0.4
152,526	+		GFF5051	0.77	+0.8
152,526	+		GFF5051	0.77	-0.8
152,526	+		GFF5051	0.77	-0.7
152,526	+		GFF5051	0.77	-1.0
152,526	+		GFF5051	0.77	-0.4
152,526	+		GFF5051	0.77	+0.1
152,526	+		GFF5051	0.77	-0.3
152,527	-		GFF5051	0.77	-0.7
152,527	-		GFF5051	0.77	-0.7
152,527	-		GFF5051	0.77	-0.4
152,527	-		GFF5051	0.77	-0.1
152,527	-		GFF5051	0.77	-0.6
152,527	-		GFF5051	0.77	+0.1
152,577	+		GFF5051	0.82	-0.5
152,578	-		GFF5051	0.82	+0.4
152,578	-		GFF5051	0.82	-0.6
152,589	+		GFF5051	0.83	-1.8
152,589	+		GFF5051	0.83	-1.3
152,589	+		GFF5051	0.83	-2.4
152,589	+		GFF5051	0.83	-1.1
152,589	+		GFF5051	0.83	+0.2
152,589	+		GFF5051	0.83	+0.6
152,590	-		GFF5051	0.84	+0.2
152,590	-		GFF5051	0.84	+0.2
152,590	-		GFF5051	0.84	-0.5
152,610	+		GFF5051	0.86	-0.5
152,610	+		GFF5051	0.86	-0.5
152,610	+		GFF5051	0.86	-0.4
152,611	-		GFF5051	0.86	-0.9
152,611	-		GFF5051	0.86	-0.8
152,611	-		GFF5051	0.86	-0.1
152,611	-		GFF5051	0.86	-0.4
152,611	-		GFF5051	0.86	+0.6