Strain Fitness in Variovorax sp. SCN45 around GFF5005

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5004 and GFF5005 are separated by 85 nucleotidesGFF5005 and GFF5006 are separated by 134 nucleotides GFF5004 - N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14), at 103,833 to 105,035 GFF5004 GFF5005 - cytidine/deoxycytidylate deaminase family protein, at 105,121 to 105,651 GFF5005 GFF5006 - Uncharacterized deacetylase, at 105,786 to 106,952 GFF5006 Position (kb) 105 106Strain fitness (log2 ratio) -2 -1 0 1 2 3at 104.152 kb on + strand, within GFF5004at 104.152 kb on + strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 105.043 kb on - strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.062 kb on + strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.063 kb on - strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.064 kb on + strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.065 kb on - strandat 105.091 kb on + strandat 105.091 kb on + strandat 105.091 kb on + strandat 105.091 kb on + strandat 105.092 kb on - strandat 105.092 kb on - strandat 105.092 kb on - strandat 105.095 kb on + strandat 105.095 kb on + strandat 105.095 kb on + strandat 105.096 kb on - strandat 105.096 kb on - strandat 105.096 kb on - strandat 105.096 kb on - strandat 105.299 kb on + strand, within GFF5005at 105.299 kb on + strand, within GFF5005at 105.300 kb on - strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.326 kb on + strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.327 kb on - strand, within GFF5005at 105.563 kb on - strand, within GFF5005at 105.563 kb on - strand, within GFF5005at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.930 kb on + strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 105.931 kb on - strand, within GFF5006at 106.010 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.194 kb on + strand, within GFF5006at 106.195 kb on - strand, within GFF5006at 106.195 kb on - strand, within GFF5006at 106.326 kb on + strand, within GFF5006at 106.327 kb on - strand, within GFF5006at 106.327 kb on - strand, within GFF5006at 106.327 kb on - strand, within GFF5006at 106.327 kb on - strand, within GFF5006at 106.333 kb on - strand, within GFF5006at 106.333 kb on - strand, within GFF5006at 106.333 kb on - strand, within GFF5006at 106.467 kb on + strand, within GFF5006at 106.564 kb on - strand, within GFF5006at 106.623 kb on + strand, within GFF5006at 106.623 kb on + strand, within GFF5006at 106.623 kb on + strand, within GFF5006at 106.623 kb on + strand, within GFF5006at 106.624 kb on - strand, within GFF5006at 106.624 kb on - strand, within GFF5006

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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104,152 + GFF5004 0.27 -1.0
104,152 + GFF5004 0.27 +0.3
104,153 - GFF5004 0.27 -0.1
104,153 - GFF5004 0.27 +0.9
104,153 - GFF5004 0.27 -0.4
104,153 - GFF5004 0.27 +0.4
104,155 + GFF5004 0.27 +0.6
104,155 + GFF5004 0.27 -0.3
104,155 + GFF5004 0.27 +0.1
104,156 - GFF5004 0.27 -0.2
104,156 - GFF5004 0.27 -0.5
104,156 - GFF5004 0.27 -0.6
104,653 + GFF5004 0.68 -0.5
104,653 + GFF5004 0.68 -0.1
104,653 + GFF5004 0.68 -1.6
104,653 + GFF5004 0.68 -0.3
104,653 + GFF5004 0.68 -0.9
104,654 - GFF5004 0.68 +0.7
104,654 - GFF5004 0.68 -1.0
104,654 - GFF5004 0.68 +0.4
104,654 - GFF5004 0.68 -0.6
104,654 - GFF5004 0.68 -0.3
104,654 - GFF5004 0.68 -1.1
104,654 - GFF5004 0.68 +0.7
104,654 - GFF5004 0.68 -0.2
104,654 - GFF5004 0.68 -0.3
104,654 - GFF5004 0.68 +0.2
104,654 - GFF5004 0.68 -0.5
104,654 - GFF5004 0.68 +0.0
104,654 - GFF5004 0.68 +0.4
105,043 - -0.2
105,062 + -0.6
105,062 + -0.5
105,062 + +0.3
105,062 + +0.4
105,062 + +0.8
105,062 + -0.6
105,062 + -0.2
105,062 + +0.1
105,062 + +0.9
105,062 + -0.9
105,062 + -0.9
105,063 - +0.8
105,063 - -0.2
105,063 - +0.5
105,063 - -0.3
105,063 - -0.8
105,063 - -1.0
105,063 - -1.2
105,063 - -0.8
105,063 - +0.9
105,063 - -0.4
105,064 + -0.1
105,064 + -0.1
105,064 + -0.9
105,064 + -0.4
105,064 + -1.0
105,064 + -0.8
105,064 + -0.5
105,064 + +1.2
105,064 + +0.9
105,064 + +1.3
105,064 + +3.4
105,064 + -0.6
105,065 - +0.7
105,065 - -1.1
105,065 - -0.4
105,065 - -0.4
105,065 - +1.2
105,065 - +1.5
105,065 - -1.1
105,065 - -1.3
105,065 - -0.5
105,065 - -0.0
105,065 - -0.2
105,065 - -0.2
105,065 - +0.6
105,065 - -0.1
105,065 - -0.4
105,065 - -0.7
105,065 - +0.6
105,091 + -0.0
105,091 + -0.5
105,091 + +0.0
105,091 + -1.4
105,092 - +0.4
105,092 - -0.7
105,092 - -1.2
105,095 + +0.1
105,095 + -0.9
105,095 + -0.6
105,096 - -0.3
105,096 - +0.8
105,096 - +0.9
105,096 - +0.1
105,299 + GFF5005 0.34 +0.1
105,299 + GFF5005 0.34 -1.2
105,300 - GFF5005 0.34 +0.5
105,326 + GFF5005 0.39 -0.4
105,326 + GFF5005 0.39 -0.2
105,326 + GFF5005 0.39 +0.6
105,326 + GFF5005 0.39 +1.5
105,326 + GFF5005 0.39 +0.4
105,326 + GFF5005 0.39 -1.9
105,326 + GFF5005 0.39 -0.7
105,326 + GFF5005 0.39 -0.3
105,326 + GFF5005 0.39 -0.1
105,327 - GFF5005 0.39 +0.6
105,327 - GFF5005 0.39 -0.3
105,327 - GFF5005 0.39 +1.4
105,327 - GFF5005 0.39 -0.9
105,327 - GFF5005 0.39 -0.6
105,327 - GFF5005 0.39 -0.3
105,327 - GFF5005 0.39 -0.4
105,327 - GFF5005 0.39 -1.8
105,327 - GFF5005 0.39 -0.1
105,327 - GFF5005 0.39 +0.1
105,327 - GFF5005 0.39 -2.1
105,327 - GFF5005 0.39 -0.1
105,563 - GFF5005 0.83 -0.9
105,563 - GFF5005 0.83 -0.3
105,930 + GFF5006 0.12 +0.4
105,930 + GFF5006 0.12 +0.3
105,930 + GFF5006 0.12 +0.4
105,930 + GFF5006 0.12 -0.1
105,930 + GFF5006 0.12 -0.1
105,930 + GFF5006 0.12 -0.1
105,930 + GFF5006 0.12 -0.7
105,930 + GFF5006 0.12 +0.1
105,930 + GFF5006 0.12 +0.8
105,930 + GFF5006 0.12 -0.3
105,931 - GFF5006 0.12 +0.6
105,931 - GFF5006 0.12 -1.0
105,931 - GFF5006 0.12 -0.2
105,931 - GFF5006 0.12 +0.6
105,931 - GFF5006 0.12 +0.0
105,931 - GFF5006 0.12 +0.0
105,931 - GFF5006 0.12 +0.2
105,931 - GFF5006 0.12 +0.3
105,931 - GFF5006 0.12 +0.6
105,931 - GFF5006 0.12 +0.2
105,931 - GFF5006 0.12 -0.4
105,931 - GFF5006 0.12 +0.9
106,010 + GFF5006 0.19 -0.4
106,194 + GFF5006 0.35 -2.1
106,194 + GFF5006 0.35 -0.2
106,194 + GFF5006 0.35 +0.5
106,194 + GFF5006 0.35 -1.0
106,194 + GFF5006 0.35 -0.8
106,194 + GFF5006 0.35 -0.2
106,194 + GFF5006 0.35 +0.2
106,194 + GFF5006 0.35 +0.3
106,194 + GFF5006 0.35 -1.2
106,195 - GFF5006 0.35 -0.3
106,195 - GFF5006 0.35 -0.5
106,326 + GFF5006 0.46 +1.1
106,327 - GFF5006 0.46 -1.6
106,327 - GFF5006 0.46 -0.2
106,327 - GFF5006 0.46 +0.5
106,327 - GFF5006 0.46 -0.5
106,333 - GFF5006 0.47 -1.4
106,333 - GFF5006 0.47 -0.6
106,333 - GFF5006 0.47 +0.3
106,467 + GFF5006 0.58 +0.3
106,564 - GFF5006 0.67 -1.2
106,623 + GFF5006 0.72 +1.1
106,623 + GFF5006 0.72 -0.2
106,623 + GFF5006 0.72 +1.6
106,623 + GFF5006 0.72 +1.5
106,624 - GFF5006 0.72 -0.3
106,624 - GFF5006 0.72 +1.2

Or see this region's nucleotide sequence