Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4983 and GFF4984 overlap by 1 nucleotides GFF4984 and GFF4985 are separated by 83 nucleotides
GFF4983 - fumarate reductase/succinate dehydrogenase flavoprotein-like, at 83,183 to 84,532
GFF4983
GFF4984 - Tricarboxylate transport protein TctC, at 84,532 to 85,509
GFF4984
GFF4985 - Tricarboxylate transport protein TctC, at 85,593 to 86,579
GFF4985
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.557 kb on - strand, within GFF4983 at 83.557 kb on - strand, within GFF4983 at 83.557 kb on - strand, within GFF4983 at 83.557 kb on - strand, within GFF4983 at 83.557 kb on - strand, within GFF4983 at 83.557 kb on - strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.661 kb on + strand, within GFF4983 at 83.662 kb on - strand, within GFF4983 at 83.662 kb on - strand, within GFF4983 at 83.826 kb on + strand, within GFF4983 at 83.827 kb on - strand, within GFF4983 at 83.827 kb on - strand, within GFF4983 at 83.827 kb on - strand, within GFF4983 at 83.827 kb on - strand, within GFF4983 at 83.827 kb on - strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.120 kb on + strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.121 kb on - strand, within GFF4983 at 84.180 kb on + strand, within GFF4983 at 84.180 kb on + strand, within GFF4983 at 84.180 kb on + strand, within GFF4983 at 84.180 kb on + strand, within GFF4983 at 84.181 kb on - strand, within GFF4983 at 84.181 kb on - strand, within GFF4983 at 84.195 kb on + strand, within GFF4983 at 84.195 kb on + strand, within GFF4983 at 84.195 kb on + strand, within GFF4983 at 84.196 kb on - strand, within GFF4983 at 84.327 kb on + strand, within GFF4983 at 84.327 kb on + strand, within GFF4983 at 84.328 kb on - strand, within GFF4983 at 84.328 kb on - strand, within GFF4983 at 84.328 kb on - strand, within GFF4983 at 84.384 kb on + strand, within GFF4983 at 84.403 kb on + strand at 84.403 kb on + strand at 84.403 kb on + strand at 84.404 kb on - strand at 84.404 kb on - strand at 84.404 kb on - strand at 84.404 kb on - strand at 84.404 kb on - strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.477 kb on + strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.478 kb on - strand at 84.533 kb on + strand at 84.533 kb on + strand at 84.533 kb on + strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.534 kb on - strand at 84.950 kb on + strand, within GFF4984 at 84.951 kb on - strand, within GFF4984 at 84.951 kb on - strand, within GFF4984 at 84.951 kb on - strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.040 kb on + strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.041 kb on - strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.148 kb on + strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.149 kb on - strand, within GFF4984 at 85.172 kb on + strand, within GFF4984 at 85.187 kb on + strand, within GFF4984 at 85.187 kb on + strand, within GFF4984 at 85.187 kb on + strand, within GFF4984 at 85.187 kb on + strand, within GFF4984 at 85.187 kb on + strand, within GFF4984 at 85.188 kb on - strand, within GFF4984 at 85.188 kb on - strand, within GFF4984 at 85.188 kb on - strand, within GFF4984 at 85.188 kb on - strand, within GFF4984 at 85.555 kb on + strand at 85.555 kb on + strand at 85.555 kb on + strand at 85.555 kb on + strand at 85.556 kb on - strand at 85.556 kb on - strand at 85.556 kb on - strand at 85.556 kb on - strand at 85.556 kb on - strand at 85.556 kb on - strand at 85.594 kb on + strand at 85.595 kb on - strand at 85.595 kb on - strand at 85.633 kb on + strand at 85.633 kb on + strand at 85.633 kb on + strand at 85.634 kb on - strand at 85.634 kb on - strand at 85.909 kb on + strand, within GFF4985 at 85.909 kb on + strand, within GFF4985 at 85.909 kb on + strand, within GFF4985 at 85.909 kb on + strand, within GFF4985 at 85.910 kb on - strand, within GFF4985 at 85.910 kb on - strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.930 kb on + strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.931 kb on - strand, within GFF4985 at 85.996 kb on + strand, within GFF4985 at 85.996 kb on + strand, within GFF4985 at 85.996 kb on + strand, within GFF4985 at 85.997 kb on - strand, within GFF4985 at 85.997 kb on - strand, within GFF4985 at 86.104 kb on + strand, within GFF4985 at 86.105 kb on - strand, within GFF4985 at 86.105 kb on - strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.257 kb on + strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.258 kb on - strand, within GFF4985 at 86.309 kb on - strand, within GFF4985 at 86.309 kb on - strand, within GFF4985 at 86.309 kb on - strand, within GFF4985
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 83,557 - GFF4983 0.28 -0.0 83,557 - GFF4983 0.28 -0.6 83,557 - GFF4983 0.28 +0.4 83,557 - GFF4983 0.28 +0.0 83,557 - GFF4983 0.28 -0.3 83,557 - GFF4983 0.28 +0.9 83,661 + GFF4983 0.35 -0.1 83,661 + GFF4983 0.35 -0.6 83,661 + GFF4983 0.35 +0.9 83,661 + GFF4983 0.35 -0.3 83,661 + GFF4983 0.35 -0.1 83,661 + GFF4983 0.35 -0.2 83,662 - GFF4983 0.35 +1.4 83,662 - GFF4983 0.35 -0.4 83,826 + GFF4983 0.48 -0.6 83,827 - GFF4983 0.48 -0.2 83,827 - GFF4983 0.48 -2.1 83,827 - GFF4983 0.48 +0.3 83,827 - GFF4983 0.48 -1.6 83,827 - GFF4983 0.48 -0.1 84,120 + GFF4983 0.69 +1.2 84,120 + GFF4983 0.69 +1.4 84,120 + GFF4983 0.69 -0.2 84,120 + GFF4983 0.69 -0.4 84,120 + GFF4983 0.69 -0.5 84,120 + GFF4983 0.69 -0.3 84,120 + GFF4983 0.69 +0.6 84,120 + GFF4983 0.69 -1.4 84,120 + GFF4983 0.69 -1.4 84,120 + GFF4983 0.69 -0.6 84,121 - GFF4983 0.69 +0.6 84,121 - GFF4983 0.69 +0.3 84,121 - GFF4983 0.69 -1.4 84,121 - GFF4983 0.69 -0.5 84,121 - GFF4983 0.69 +0.0 84,121 - GFF4983 0.69 -2.5 84,121 - GFF4983 0.69 -1.1 84,121 - GFF4983 0.69 +0.6 84,121 - GFF4983 0.69 +0.0 84,121 - GFF4983 0.69 -0.0 84,121 - GFF4983 0.69 -0.8 84,121 - GFF4983 0.69 +0.1 84,121 - GFF4983 0.69 -0.9 84,121 - GFF4983 0.69 +0.6 84,121 - GFF4983 0.69 -0.8 84,121 - GFF4983 0.69 +0.2 84,121 - GFF4983 0.69 -0.1 84,180 + GFF4983 0.74 -0.3 84,180 + GFF4983 0.74 -1.2 84,180 + GFF4983 0.74 +0.1 84,180 + GFF4983 0.74 +1.1 84,181 - GFF4983 0.74 -1.4 84,181 - GFF4983 0.74 -0.1 84,195 + GFF4983 0.75 -1.3 84,195 + GFF4983 0.75 -0.1 84,195 + GFF4983 0.75 -0.2 84,196 - GFF4983 0.75 -0.9 84,327 + GFF4983 0.85 +0.9 84,327 + GFF4983 0.85 -0.5 84,328 - GFF4983 0.85 -1.1 84,328 - GFF4983 0.85 -0.4 84,328 - GFF4983 0.85 -0.4 84,384 + GFF4983 0.89 +0.9 84,403 + -0.9 84,403 + +0.1 84,403 + -0.2 84,404 - +0.3 84,404 - +0.4 84,404 - +0.2 84,404 - -0.5 84,404 - -0.9 84,477 + -0.1 84,477 + -0.5 84,477 + +0.9 84,477 + -0.4 84,477 + +0.7 84,477 + -0.2 84,477 + +0.4 84,477 + -0.9 84,477 + -0.4 84,477 + -1.0 84,478 - -0.4 84,478 - +0.1 84,478 - -1.6 84,478 - -0.4 84,478 - -0.4 84,478 - -0.7 84,478 - +0.8 84,478 - -0.1 84,478 - -0.1 84,478 - -1.3 84,478 - -0.3 84,478 - -0.3 84,478 - +0.1 84,478 - +0.6 84,478 - +0.3 84,478 - +1.9 84,478 - -0.5 84,478 - -0.1 84,478 - +0.2 84,478 - -0.2 84,478 - +0.4 84,478 - -0.1 84,478 - -0.6 84,533 + -0.4 84,533 + +0.0 84,533 + +0.7 84,534 - +0.6 84,534 - +0.0 84,534 - -0.5 84,534 - +0.1 84,534 - -0.3 84,534 - -0.1 84,534 - -0.4 84,534 - -0.3 84,950 + GFF4984 0.43 +0.2 84,951 - GFF4984 0.43 -0.1 84,951 - GFF4984 0.43 -0.0 84,951 - GFF4984 0.43 -0.1 85,040 + GFF4984 0.52 -0.3 85,040 + GFF4984 0.52 +1.2 85,040 + GFF4984 0.52 +0.6 85,040 + GFF4984 0.52 +0.2 85,040 + GFF4984 0.52 +0.2 85,040 + GFF4984 0.52 +0.1 85,040 + GFF4984 0.52 +0.1 85,041 - GFF4984 0.52 -0.8 85,041 - GFF4984 0.52 +0.5 85,041 - GFF4984 0.52 +0.1 85,041 - GFF4984 0.52 +0.1 85,041 - GFF4984 0.52 +0.4 85,041 - GFF4984 0.52 -0.6 85,041 - GFF4984 0.52 -0.6 85,041 - GFF4984 0.52 +0.4 85,041 - GFF4984 0.52 +0.0 85,148 + GFF4984 0.63 -0.5 85,148 + GFF4984 0.63 +0.3 85,148 + GFF4984 0.63 -0.2 85,148 + GFF4984 0.63 -0.6 85,148 + GFF4984 0.63 +1.0 85,148 + GFF4984 0.63 -0.3 85,149 - GFF4984 0.63 -0.8 85,149 - GFF4984 0.63 +0.2 85,149 - GFF4984 0.63 -0.4 85,149 - GFF4984 0.63 +0.4 85,149 - GFF4984 0.63 -0.1 85,149 - GFF4984 0.63 -0.9 85,149 - GFF4984 0.63 +0.0 85,149 - GFF4984 0.63 -0.5 85,149 - GFF4984 0.63 +0.3 85,149 - GFF4984 0.63 -0.2 85,149 - GFF4984 0.63 +0.6 85,149 - GFF4984 0.63 +1.1 85,149 - GFF4984 0.63 -0.6 85,149 - GFF4984 0.63 -2.1 85,149 - GFF4984 0.63 +0.8 85,172 + GFF4984 0.65 -1.0 85,187 + GFF4984 0.67 -0.1 85,187 + GFF4984 0.67 -0.3 85,187 + GFF4984 0.67 +1.1 85,187 + GFF4984 0.67 -0.1 85,187 + GFF4984 0.67 -0.9 85,188 - GFF4984 0.67 +0.7 85,188 - GFF4984 0.67 -0.4 85,188 - GFF4984 0.67 -0.1 85,188 - GFF4984 0.67 +0.2 85,555 + -0.2 85,555 + -0.5 85,555 + -2.1 85,555 + -0.3 85,556 - +0.6 85,556 - -0.8 85,556 - -0.5 85,556 - -1.5 85,556 - -0.5 85,556 - -0.1 85,594 + +0.4 85,595 - +1.4 85,595 - -0.5 85,633 + -0.2 85,633 + -0.5 85,633 + -0.1 85,634 - +0.4 85,634 - -0.0 85,909 + GFF4985 0.32 +0.2 85,909 + GFF4985 0.32 +0.8 85,909 + GFF4985 0.32 -0.3 85,909 + GFF4985 0.32 +0.4 85,910 - GFF4985 0.32 -0.2 85,910 - GFF4985 0.32 +0.2 85,930 + GFF4985 0.34 -0.7 85,930 + GFF4985 0.34 -0.4 85,930 + GFF4985 0.34 +0.0 85,930 + GFF4985 0.34 -3.4 85,930 + GFF4985 0.34 -0.4 85,930 + GFF4985 0.34 -1.5 85,930 + GFF4985 0.34 +0.4 85,930 + GFF4985 0.34 +0.4 85,931 - GFF4985 0.34 -0.8 85,931 - GFF4985 0.34 +0.9 85,931 - GFF4985 0.34 -1.2 85,931 - GFF4985 0.34 +0.5 85,931 - GFF4985 0.34 -0.8 85,931 - GFF4985 0.34 -0.9 85,931 - GFF4985 0.34 +0.4 85,931 - GFF4985 0.34 +1.5 85,931 - GFF4985 0.34 -0.4 85,931 - GFF4985 0.34 +1.4 85,931 - GFF4985 0.34 +1.0 85,996 + GFF4985 0.41 +0.4 85,996 + GFF4985 0.41 +1.4 85,996 + GFF4985 0.41 -0.5 85,997 - GFF4985 0.41 -0.9 85,997 - GFF4985 0.41 +0.3 86,104 + GFF4985 0.52 +1.4 86,105 - GFF4985 0.52 +0.9 86,105 - GFF4985 0.52 -0.6 86,257 + GFF4985 0.67 +0.4 86,257 + GFF4985 0.67 -0.2 86,257 + GFF4985 0.67 +0.0 86,257 + GFF4985 0.67 -1.6 86,257 + GFF4985 0.67 -0.4 86,257 + GFF4985 0.67 +0.4 86,257 + GFF4985 0.67 -0.6 86,257 + GFF4985 0.67 +0.5 86,258 - GFF4985 0.67 +0.1 86,258 - GFF4985 0.67 +0.9 86,258 - GFF4985 0.67 -2.9 86,258 - GFF4985 0.67 +0.0 86,258 - GFF4985 0.67 -1.1 86,258 - GFF4985 0.67 -0.1 86,258 - GFF4985 0.67 -0.6 86,258 - GFF4985 0.67 +0.3 86,309 - GFF4985 0.73 +0.0 86,309 - GFF4985 0.73 -0.1 86,309 - GFF4985 0.73 +0.4
Or see this region's nucleotide sequence