Strain Fitness in Variovorax sp. SCN45 around GFF4935

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4933 and GFF4934 overlap by 8 nucleotidesGFF4934 and GFF4935 overlap by 4 nucleotidesGFF4935 and GFF4936 are separated by 10 nucleotides GFF4933 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 26,717 to 27,565 GFF4933 GFF4934 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 27,558 to 28,454 GFF4934 GFF4935 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 28,451 to 29,473 GFF4935 GFF4936 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 29,484 to 31,058 GFF4936 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 27.528 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.579 kb on + strandat 27.580 kb on - strandat 27.580 kb on - strandat 27.580 kb on - strandat 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.676 kb on + strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 27.677 kb on - strand, within GFF4934at 28.084 kb on + strand, within GFF4934at 28.085 kb on - strand, within GFF4934at 28.171 kb on + strand, within GFF4934at 28.172 kb on - strand, within GFF4934at 28.587 kb on + strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.588 kb on - strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.653 kb on + strand, within GFF4935at 28.654 kb on - strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.758 kb on + strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.759 kb on - strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.809 kb on + strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.810 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.825 kb on - strand, within GFF4935at 28.938 kb on + strand, within GFF4935at 28.938 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.944 kb on + strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.945 kb on - strand, within GFF4935at 28.992 kb on + strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 28.993 kb on - strand, within GFF4935at 29.041 kb on - strand, within GFF4935at 29.178 kb on + strand, within GFF4935at 29.256 kb on + strand, within GFF4935at 29.257 kb on - strand, within GFF4935at 29.316 kb on + strand, within GFF4935at 29.486 kb on - strandat 29.504 kb on - strandat 29.504 kb on - strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.536 kb on + strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.537 kb on - strandat 29.632 kb on + strandat 29.633 kb on - strandat 29.737 kb on + strand, within GFF4936at 29.764 kb on + strand, within GFF4936at 29.764 kb on + strand, within GFF4936at 29.764 kb on + strand, within GFF4936at 29.815 kb on + strand, within GFF4936at 29.815 kb on + strand, within GFF4936at 29.816 kb on - strand, within GFF4936at 29.816 kb on - strand, within GFF4936at 29.816 kb on - strand, within GFF4936at 30.037 kb on + strand, within GFF4936at 30.038 kb on - strand, within GFF4936at 30.038 kb on - strand, within GFF4936at 30.038 kb on - strand, within GFF4936at 30.038 kb on - strand, within GFF4936at 30.038 kb on - strand, within GFF4936at 30.133 kb on + strand, within GFF4936at 30.133 kb on + strand, within GFF4936at 30.134 kb on - strand, within GFF4936at 30.134 kb on - strand, within GFF4936at 30.145 kb on + strand, within GFF4936at 30.433 kb on + strand, within GFF4936at 30.433 kb on + strand, within GFF4936at 30.433 kb on + strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.434 kb on - strand, within GFF4936at 30.449 kb on - strand, within GFF4936

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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27,528 + -0.6
27,579 + +0.5
27,579 + +0.4
27,579 + -1.3
27,580 - +1.0
27,580 - +0.4
27,580 - -0.6
27,676 + GFF4934 0.13 +0.4
27,676 + GFF4934 0.13 -0.3
27,676 + GFF4934 0.13 -0.3
27,676 + GFF4934 0.13 -0.6
27,676 + GFF4934 0.13 -0.2
27,676 + GFF4934 0.13 -0.5
27,676 + GFF4934 0.13 -1.0
27,676 + GFF4934 0.13 +0.7
27,676 + GFF4934 0.13 -0.8
27,676 + GFF4934 0.13 +0.1
27,677 - GFF4934 0.13 -0.2
27,677 - GFF4934 0.13 -0.6
27,677 - GFF4934 0.13 -2.1
28,084 + GFF4934 0.59 +0.9
28,085 - GFF4934 0.59 -0.8
28,171 + GFF4934 0.68 -0.4
28,172 - GFF4934 0.68 -0.4
28,587 + GFF4935 0.13 -0.3
28,588 - GFF4935 0.13 -0.3
28,588 - GFF4935 0.13 +0.4
28,588 - GFF4935 0.13 -0.4
28,588 - GFF4935 0.13 +1.5
28,588 - GFF4935 0.13 -1.1
28,588 - GFF4935 0.13 -1.3
28,588 - GFF4935 0.13 -0.2
28,588 - GFF4935 0.13 -0.7
28,588 - GFF4935 0.13 -0.1
28,653 + GFF4935 0.20 -2.2
28,653 + GFF4935 0.20 +0.4
28,653 + GFF4935 0.20 +0.6
28,654 - GFF4935 0.20 +0.8
28,758 + GFF4935 0.30 +1.2
28,758 + GFF4935 0.30 -1.1
28,758 + GFF4935 0.30 -0.8
28,759 - GFF4935 0.30 -0.5
28,759 - GFF4935 0.30 +1.1
28,759 - GFF4935 0.30 +0.7
28,759 - GFF4935 0.30 -0.5
28,759 - GFF4935 0.30 -0.1
28,759 - GFF4935 0.30 -1.1
28,759 - GFF4935 0.30 -0.2
28,759 - GFF4935 0.30 -0.2
28,759 - GFF4935 0.30 +0.6
28,809 + GFF4935 0.35 +0.4
28,809 + GFF4935 0.35 +0.5
28,809 + GFF4935 0.35 +0.3
28,809 + GFF4935 0.35 +1.4
28,809 + GFF4935 0.35 -0.7
28,810 - GFF4935 0.35 -0.5
28,810 - GFF4935 0.35 -0.4
28,810 - GFF4935 0.35 -0.5
28,810 - GFF4935 0.35 -0.1
28,825 - GFF4935 0.37 +1.2
28,825 - GFF4935 0.37 -0.1
28,825 - GFF4935 0.37 -0.1
28,825 - GFF4935 0.37 +0.1
28,825 - GFF4935 0.37 +0.1
28,938 + GFF4935 0.48 -0.1
28,938 + GFF4935 0.48 -0.6
28,944 + GFF4935 0.48 +1.1
28,944 + GFF4935 0.48 -0.1
28,944 + GFF4935 0.48 +0.7
28,944 + GFF4935 0.48 -0.2
28,944 + GFF4935 0.48 -0.1
28,944 + GFF4935 0.48 +0.1
28,944 + GFF4935 0.48 +0.3
28,944 + GFF4935 0.48 +0.5
28,945 - GFF4935 0.48 -0.1
28,945 - GFF4935 0.48 +0.9
28,945 - GFF4935 0.48 -2.1
28,945 - GFF4935 0.48 -0.3
28,945 - GFF4935 0.48 +0.8
28,945 - GFF4935 0.48 -0.2
28,992 + GFF4935 0.53 -1.4
28,993 - GFF4935 0.53 +0.2
28,993 - GFF4935 0.53 +0.7
28,993 - GFF4935 0.53 +0.0
28,993 - GFF4935 0.53 -0.0
28,993 - GFF4935 0.53 +1.4
29,041 - GFF4935 0.58 +0.0
29,178 + GFF4935 0.71 +1.2
29,256 + GFF4935 0.79 +1.2
29,257 - GFF4935 0.79 +0.5
29,316 + GFF4935 0.85 -0.5
29,486 - -0.4
29,504 - +0.7
29,504 - +0.8
29,536 + -0.1
29,536 + +1.2
29,536 + -0.5
29,537 - +1.2
29,537 - -0.1
29,537 - +0.1
29,632 + -0.7
29,633 - -0.5
29,737 + GFF4936 0.16 -0.0
29,764 + GFF4936 0.18 +0.4
29,764 + GFF4936 0.18 -0.2
29,764 + GFF4936 0.18 -0.2
29,815 + GFF4936 0.21 +0.1
29,815 + GFF4936 0.21 -0.1
29,816 - GFF4936 0.21 +0.7
29,816 - GFF4936 0.21 +0.0
29,816 - GFF4936 0.21 +1.9
30,037 + GFF4936 0.35 +3.2
30,038 - GFF4936 0.35 -0.4
30,038 - GFF4936 0.35 +0.4
30,038 - GFF4936 0.35 -0.6
30,038 - GFF4936 0.35 +0.8
30,038 - GFF4936 0.35 +0.3
30,133 + GFF4936 0.41 +0.7
30,133 + GFF4936 0.41 +0.2
30,134 - GFF4936 0.41 +1.2
30,134 - GFF4936 0.41 -0.4
30,145 + GFF4936 0.42 -0.1
30,433 + GFF4936 0.60 +1.4
30,433 + GFF4936 0.60 +0.1
30,433 + GFF4936 0.60 +0.5
30,434 - GFF4936 0.60 -0.2
30,434 - GFF4936 0.60 -0.8
30,434 - GFF4936 0.60 +0.5
30,434 - GFF4936 0.60 -0.6
30,434 - GFF4936 0.60 -0.4
30,434 - GFF4936 0.60 +0.1
30,449 - GFF4936 0.61 +1.1

Or see this region's nucleotide sequence