Strain Fitness in Variovorax sp. SCN45 around GFF4906

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4905 and GFF4906 are separated by 105 nucleotides GFF4905 - hypothetical protein, at 269,740 to 271,149 GFF4905 GFF4906 - hypothetical protein, at 271,255 to 273,033 GFF4906 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -1 0 1at 270.269 kb on - strand, within GFF4905at 270.269 kb on - strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 271.147 kb on + strandat 271.147 kb on + strandat 271.147 kb on + strandat 271.148 kb on - strandat 271.174 kb on + strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.794 kb on + strand, within GFF4906at 271.795 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.837 kb on + strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.124 kb on + strand, within GFF4906at 272.124 kb on + strand, within GFF4906at 272.125 kb on - strand, within GFF4906at 272.639 kb on - strand, within GFF4906at 272.639 kb on - strand, within GFF4906at 272.639 kb on - strand, within GFF4906at 272.639 kb on - strand, within GFF4906at 272.761 kb on + strand, within GFF4906at 272.761 kb on + strand, within GFF4906at 272.761 kb on + strand, within GFF4906at 272.905 kb on + strandat 272.905 kb on + strandat 272.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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270,269 - GFF4905 0.38 -0.7
270,269 - GFF4905 0.38 -0.2
270,301 + GFF4905 0.40 -1.0
270,301 + GFF4905 0.40 +0.9
270,301 + GFF4905 0.40 -0.2
270,301 + GFF4905 0.40 -0.9
270,301 + GFF4905 0.40 -1.0
270,301 + GFF4905 0.40 +0.8
270,502 + GFF4905 0.54 -0.0
270,502 + GFF4905 0.54 -0.2
270,502 + GFF4905 0.54 -0.2
270,503 - GFF4905 0.54 -0.8
270,503 - GFF4905 0.54 +0.1
270,503 - GFF4905 0.54 -0.2
270,503 - GFF4905 0.54 -0.3
270,637 + GFF4905 0.64 -0.1
270,637 + GFF4905 0.64 -0.7
270,637 + GFF4905 0.64 -0.2
270,637 + GFF4905 0.64 +0.1
270,638 - GFF4905 0.64 -0.1
270,638 - GFF4905 0.64 -0.1
270,638 - GFF4905 0.64 +0.1
270,638 - GFF4905 0.64 +0.8
270,638 - GFF4905 0.64 +0.1
270,638 - GFF4905 0.64 -1.0
271,147 + -0.9
271,147 + -0.3
271,147 + -0.4
271,148 - -0.0
271,174 + +0.4
271,175 - +0.6
271,175 - -0.0
271,175 - -0.6
271,175 - -1.5
271,175 - -0.6
271,794 + GFF4906 0.30 -0.6
271,795 - GFF4906 0.30 +0.6
271,802 - GFF4906 0.31 -0.1
271,802 - GFF4906 0.31 -0.5
271,802 - GFF4906 0.31 -0.0
271,802 - GFF4906 0.31 +0.5
271,837 + GFF4906 0.33 +1.0
271,838 - GFF4906 0.33 -1.0
271,838 - GFF4906 0.33 -0.3
271,838 - GFF4906 0.33 -0.3
271,838 - GFF4906 0.33 +0.0
272,103 + GFF4906 0.48 -0.4
272,103 + GFF4906 0.48 +0.9
272,103 + GFF4906 0.48 -0.0
272,124 + GFF4906 0.49 -0.5
272,124 + GFF4906 0.49 -1.1
272,125 - GFF4906 0.49 -0.7
272,639 - GFF4906 0.78 -0.0
272,639 - GFF4906 0.78 -0.3
272,639 - GFF4906 0.78 -1.6
272,639 - GFF4906 0.78 -0.9
272,761 + GFF4906 0.85 -1.0
272,761 + GFF4906 0.85 +0.4
272,761 + GFF4906 0.85 +1.2
272,905 + -0.9
272,905 + -0.9
272,906 - +0.1

Or see this region's nucleotide sequence