Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4901 and GFF4902 are separated by 765 nucleotides GFF4902 and GFF4903 overlap by 4 nucleotides GFF4903 and GFF4904 are separated by 44 nucleotides GFF4904 and GFF4905 are separated by 16 nucleotides
GFF4901 - no description, at 266,438 to 266,692
GFF4901
GFF4902 - hypothetical protein, at 267,458 to 268,879
GFF4902
GFF4903 - no description, at 268,876 to 269,082
GFF4903
GFF4904 - hypothetical protein, at 269,127 to 269,723
GFF4904
GFF4905 - hypothetical protein, at 269,740 to 271,149
GFF4905
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.475 kb on + strand, within GFF4901 at 266.475 kb on + strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.476 kb on - strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.496 kb on + strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.497 kb on - strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.498 kb on + strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.499 kb on - strand, within GFF4901 at 266.528 kb on + strand, within GFF4901 at 266.528 kb on + strand, within GFF4901 at 266.652 kb on - strand, within GFF4901 at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.761 kb on + strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.762 kb on - strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.780 kb on + strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.781 kb on - strand at 266.913 kb on - strand at 266.980 kb on + strand at 266.981 kb on - strand at 266.981 kb on - strand at 266.981 kb on - strand at 267.031 kb on + strand at 267.031 kb on + strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.036 kb on + strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.037 kb on - strand at 267.043 kb on + strand at 267.043 kb on + strand at 267.044 kb on - strand at 267.046 kb on + strand at 267.047 kb on - strand at 267.072 kb on + strand at 267.073 kb on - strand at 267.073 kb on - strand at 267.073 kb on - strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.120 kb on + strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.121 kb on - strand at 267.198 kb on + strand at 267.198 kb on + strand at 267.198 kb on + strand at 267.199 kb on - strand at 267.199 kb on - strand at 267.199 kb on - strand at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.680 kb on + strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.681 kb on - strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 267.719 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.205 kb on + strand, within GFF4902 at 268.206 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.270 kb on - strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.448 kb on + strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.449 kb on - strand, within GFF4902 at 268.802 kb on + strand at 268.802 kb on + strand at 269.024 kb on - strand, within GFF4903 at 269.126 kb on + strand at 269.126 kb on + strand at 269.127 kb on - strand at 269.140 kb on + strand at 269.371 kb on - strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.385 kb on + strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.386 kb on - strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.400 kb on + strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.401 kb on - strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.415 kb on + strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.416 kb on - strand, within GFF4904 at 269.660 kb on + strand, within GFF4904 at 269.661 kb on - strand, within GFF4904
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 266,475 + GFF4901 0.15 -2.3 266,475 + GFF4901 0.15 -0.1 266,476 - GFF4901 0.15 +0.4 266,476 - GFF4901 0.15 +0.7 266,476 - GFF4901 0.15 +0.9 266,476 - GFF4901 0.15 -2.2 266,476 - GFF4901 0.15 -0.0 266,496 + GFF4901 0.23 -0.0 266,496 + GFF4901 0.23 -1.7 266,496 + GFF4901 0.23 -0.2 266,497 - GFF4901 0.23 -1.0 266,497 - GFF4901 0.23 -0.7 266,497 - GFF4901 0.23 +0.4 266,497 - GFF4901 0.23 +1.0 266,497 - GFF4901 0.23 +0.1 266,498 + GFF4901 0.24 +0.1 266,498 + GFF4901 0.24 +0.3 266,498 + GFF4901 0.24 -0.3 266,498 + GFF4901 0.24 +0.3 266,498 + GFF4901 0.24 +0.4 266,499 - GFF4901 0.24 +0.8 266,499 - GFF4901 0.24 +0.4 266,499 - GFF4901 0.24 -0.3 266,499 - GFF4901 0.24 -0.7 266,528 + GFF4901 0.35 +0.1 266,528 + GFF4901 0.35 -1.2 266,652 - GFF4901 0.84 +0.7 266,761 + -0.2 266,761 + +1.0 266,761 + -0.7 266,761 + -0.7 266,761 + -0.9 266,761 + +1.2 266,761 + -1.4 266,761 + +0.1 266,761 + +0.2 266,761 + -0.5 266,761 + +1.8 266,761 + -1.0 266,761 + +0.8 266,761 + -0.3 266,761 + -0.2 266,761 + +0.4 266,761 + +0.4 266,761 + +0.8 266,761 + -0.3 266,762 - +1.2 266,762 - -0.8 266,762 - -0.6 266,762 - +0.4 266,762 - -0.0 266,762 - -0.1 266,762 - +0.3 266,762 - -0.6 266,762 - -1.7 266,762 - +0.3 266,762 - -0.6 266,762 - +0.3 266,762 - +0.1 266,762 - -0.3 266,762 - -1.1 266,780 + -1.6 266,780 + -0.2 266,780 + -2.5 266,780 + +0.3 266,780 + +0.9 266,780 + -0.5 266,780 + +0.7 266,780 + +0.3 266,780 + -0.3 266,780 + -0.5 266,780 + +0.2 266,780 + +1.0 266,780 + +0.8 266,781 - -0.5 266,781 - -0.9 266,781 - -2.0 266,781 - +0.6 266,781 - +0.1 266,781 - -0.0 266,781 - +0.6 266,781 - -0.9 266,781 - -1.0 266,781 - -0.5 266,781 - -0.2 266,781 - -0.2 266,913 - +0.6 266,980 + -0.4 266,981 - -0.1 266,981 - +0.1 266,981 - -0.2 267,031 + +0.9 267,031 + -1.0 267,032 - -0.4 267,032 - +0.9 267,032 - +0.2 267,036 + -0.2 267,036 + +0.4 267,036 + -1.2 267,036 + +0.1 267,036 + -0.9 267,036 + +0.8 267,036 + +0.3 267,037 - -0.2 267,037 - +0.9 267,037 - +2.0 267,037 - +0.7 267,043 + -0.3 267,043 + -0.7 267,044 - -0.1 267,046 + -0.4 267,047 - -0.3 267,072 + -0.5 267,073 - -1.9 267,073 - -0.0 267,073 - +0.6 267,120 + +0.3 267,120 + +0.0 267,120 + +0.2 267,120 + +1.0 267,120 + +0.4 267,120 + -0.1 267,120 + -0.5 267,121 - -0.6 267,121 - +0.0 267,121 - -0.3 267,121 - -0.7 267,121 - +1.2 267,121 - +0.9 267,121 - -1.2 267,121 - -0.3 267,198 + +1.3 267,198 + +0.4 267,198 + -0.0 267,199 - -1.3 267,199 - +0.1 267,199 - -0.9 267,680 + GFF4902 0.16 +0.4 267,680 + GFF4902 0.16 -1.4 267,680 + GFF4902 0.16 -0.3 267,680 + GFF4902 0.16 +0.1 267,680 + GFF4902 0.16 -0.5 267,680 + GFF4902 0.16 +0.0 267,681 - GFF4902 0.16 +0.4 267,681 - GFF4902 0.16 -0.5 267,681 - GFF4902 0.16 -0.2 267,719 + GFF4902 0.18 -0.6 267,719 + GFF4902 0.18 -1.9 267,719 + GFF4902 0.18 -2.3 268,205 + GFF4902 0.53 -0.7 268,205 + GFF4902 0.53 -1.4 268,205 + GFF4902 0.53 -0.4 268,205 + GFF4902 0.53 -2.5 268,205 + GFF4902 0.53 +0.2 268,206 - GFF4902 0.53 -0.4 268,270 - GFF4902 0.57 -0.5 268,270 - GFF4902 0.57 -1.5 268,270 - GFF4902 0.57 -0.6 268,270 - GFF4902 0.57 +1.2 268,270 - GFF4902 0.57 -0.7 268,448 + GFF4902 0.70 +0.2 268,448 + GFF4902 0.70 -0.1 268,449 - GFF4902 0.70 -0.9 268,449 - GFF4902 0.70 +1.6 268,449 - GFF4902 0.70 +0.2 268,802 + +0.0 268,802 + +1.8 269,024 - GFF4903 0.71 -0.1 269,126 + +0.3 269,126 + -0.1 269,127 - +0.2 269,140 + -0.2 269,371 - GFF4904 0.41 +0.2 269,385 + GFF4904 0.43 -0.0 269,385 + GFF4904 0.43 +0.0 269,385 + GFF4904 0.43 -0.2 269,385 + GFF4904 0.43 -0.1 269,385 + GFF4904 0.43 +0.2 269,385 + GFF4904 0.43 -0.8 269,386 - GFF4904 0.43 +0.2 269,386 - GFF4904 0.43 -0.5 269,386 - GFF4904 0.43 +0.2 269,386 - GFF4904 0.43 -0.4 269,386 - GFF4904 0.43 +1.3 269,386 - GFF4904 0.43 +1.6 269,400 + GFF4904 0.46 -0.6 269,400 + GFF4904 0.46 -0.5 269,400 + GFF4904 0.46 +0.3 269,400 + GFF4904 0.46 +0.1 269,400 + GFF4904 0.46 +0.3 269,401 - GFF4904 0.46 -1.0 269,401 - GFF4904 0.46 +0.0 269,401 - GFF4904 0.46 -0.4 269,401 - GFF4904 0.46 +1.2 269,401 - GFF4904 0.46 -0.1 269,401 - GFF4904 0.46 -0.2 269,401 - GFF4904 0.46 -0.7 269,415 + GFF4904 0.48 -1.2 269,415 + GFF4904 0.48 -0.3 269,415 + GFF4904 0.48 -0.5 269,415 + GFF4904 0.48 +0.3 269,415 + GFF4904 0.48 -0.7 269,416 - GFF4904 0.48 +1.1 269,416 - GFF4904 0.48 +0.4 269,416 - GFF4904 0.48 -0.0 269,416 - GFF4904 0.48 -0.7 269,416 - GFF4904 0.48 -0.0 269,660 + GFF4904 0.89 -1.0 269,661 - GFF4904 0.89 +0.4
Or see this region's nucleotide sequence