Strain Fitness in Variovorax sp. SCN45 around GFF4864

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4863 and GFF4864 are separated by 28 nucleotidesGFF4864 and GFF4865 are separated by 11 nucleotidesGFF4865 and GFF4866 are separated by 34 nucleotides GFF4863 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 234,167 to 235,843 GFF4863 GFF4864 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 235,872 to 237,053 GFF4864 GFF4865 - Enoyl-CoA hydratase (EC 4.2.1.17), at 237,065 to 237,850 GFF4865 GFF4866 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 237,885 to 238,667 GFF4866 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.965 kb on + strand, within GFF4863at 234.965 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.157 kb on + strand, within GFF4863at 235.158 kb on - strand, within GFF4863at 235.158 kb on - strand, within GFF4863at 235.190 kb on + strand, within GFF4863at 235.190 kb on + strand, within GFF4863at 235.318 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.499 kb on + strand, within GFF4863at 235.499 kb on + strand, within GFF4863at 235.500 kb on - strand, within GFF4863at 236.089 kb on + strand, within GFF4864at 236.089 kb on + strand, within GFF4864at 236.090 kb on - strand, within GFF4864at 236.199 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.314 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864at 236.986 kb on - strandat 236.986 kb on - strandat 237.026 kb on + strandat 237.026 kb on + strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.027 kb on - strandat 237.208 kb on + strand, within GFF4865at 237.208 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.411 kb on + strand, within GFF4865at 237.412 kb on - strand, within GFF4865at 237.412 kb on - strand, within GFF4865at 237.529 kb on + strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.530 kb on - strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.760 kb on + strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.761 kb on - strand, within GFF4865at 237.848 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.859 kb on + strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 237.860 kb on - strandat 238.044 kb on + strand, within GFF4866at 238.045 kb on - strand, within GFF4866

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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234,965 + GFF4863 0.48 +1.0
234,965 + GFF4863 0.48 +0.2
235,064 + GFF4863 0.53 -1.2
235,064 + GFF4863 0.53 -0.0
235,064 + GFF4863 0.53 -0.6
235,064 + GFF4863 0.53 +0.8
235,064 + GFF4863 0.53 -0.1
235,064 + GFF4863 0.53 -0.4
235,065 - GFF4863 0.54 -0.1
235,065 - GFF4863 0.54 +1.0
235,065 - GFF4863 0.54 -0.6
235,065 - GFF4863 0.54 -0.5
235,065 - GFF4863 0.54 -0.1
235,065 - GFF4863 0.54 -0.4
235,157 + GFF4863 0.59 -0.5
235,158 - GFF4863 0.59 -0.6
235,158 - GFF4863 0.59 -0.7
235,190 + GFF4863 0.61 +0.4
235,190 + GFF4863 0.61 +0.7
235,318 + GFF4863 0.69 -1.4
235,412 + GFF4863 0.74 -0.9
235,412 + GFF4863 0.74 +1.0
235,412 + GFF4863 0.74 -0.1
235,413 - GFF4863 0.74 -0.3
235,413 - GFF4863 0.74 -1.2
235,413 - GFF4863 0.74 -0.5
235,413 - GFF4863 0.74 -2.7
235,413 - GFF4863 0.74 -0.7
235,499 + GFF4863 0.79 -0.5
235,499 + GFF4863 0.79 -2.0
235,500 - GFF4863 0.79 +0.6
236,089 + GFF4864 0.18 -1.0
236,089 + GFF4864 0.18 -2.1
236,090 - GFF4864 0.18 -0.2
236,199 + GFF4864 0.28 +0.1
236,289 + GFF4864 0.35 -0.5
236,289 + GFF4864 0.35 -0.1
236,289 + GFF4864 0.35 -0.2
236,289 + GFF4864 0.35 -0.3
236,289 + GFF4864 0.35 -1.1
236,289 + GFF4864 0.35 -0.9
236,290 - GFF4864 0.35 -0.1
236,290 - GFF4864 0.35 +0.2
236,290 - GFF4864 0.35 +2.3
236,314 - GFF4864 0.37 +0.4
236,659 - GFF4864 0.67 -1.1
236,659 - GFF4864 0.67 -1.6
236,986 - -0.7
236,986 - +1.0
237,026 + -0.2
237,026 + -0.2
237,027 - -0.0
237,027 - +0.8
237,027 - +1.1
237,027 - -0.9
237,027 - +0.6
237,027 - -0.7
237,027 - +0.1
237,027 - -0.2
237,208 + GFF4865 0.18 -0.6
237,208 + GFF4865 0.18 +0.4
237,411 + GFF4865 0.44 +0.5
237,411 + GFF4865 0.44 +0.6
237,411 + GFF4865 0.44 -0.1
237,412 - GFF4865 0.44 -0.6
237,412 - GFF4865 0.44 +0.0
237,529 + GFF4865 0.59 -0.4
237,530 - GFF4865 0.59 -1.4
237,530 - GFF4865 0.59 -0.9
237,530 - GFF4865 0.59 +0.3
237,760 + GFF4865 0.88 -0.0
237,760 + GFF4865 0.88 +0.4
237,760 + GFF4865 0.88 +2.6
237,760 + GFF4865 0.88 -0.6
237,761 - GFF4865 0.89 -0.1
237,761 - GFF4865 0.89 -0.4
237,761 - GFF4865 0.89 +0.3
237,761 - GFF4865 0.89 +0.4
237,761 - GFF4865 0.89 -0.8
237,761 - GFF4865 0.89 -2.9
237,761 - GFF4865 0.89 -0.6
237,848 + +0.1
237,859 + -1.4
237,859 + -1.0
237,859 + +0.4
237,859 + +0.7
237,859 + -1.0
237,859 + -0.2
237,859 + -0.4
237,859 + +0.3
237,859 + +0.5
237,859 + +0.7
237,860 - -0.2
237,860 - -0.5
237,860 - +0.1
237,860 - +0.1
237,860 - +0.4
237,860 - -0.2
237,860 - -0.6
237,860 - -0.3
237,860 - +0.2
237,860 - -0.1
237,860 - -0.0
238,044 + GFF4866 0.20 -1.7
238,045 - GFF4866 0.20 -0.0

Or see this region's nucleotide sequence