Strain Fitness in Variovorax sp. SCN45 around GFF4863

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4862 and GFF4863 are separated by 11 nucleotidesGFF4863 and GFF4864 are separated by 28 nucleotides GFF4862 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 233,106 to 234,155 GFF4862 GFF4863 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 234,167 to 235,843 GFF4863 GFF4864 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 235,872 to 237,053 GFF4864 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 233.457 kb on + strand, within GFF4862at 233.458 kb on - strand, within GFF4862at 233.458 kb on - strand, within GFF4862at 233.523 kb on + strand, within GFF4862at 233.523 kb on + strand, within GFF4862at 233.523 kb on + strand, within GFF4862at 233.523 kb on + strand, within GFF4862at 233.523 kb on + strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.524 kb on - strand, within GFF4862at 233.593 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.796 kb on + strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.797 kb on - strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.803 kb on + strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.804 kb on - strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.805 kb on + strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.806 kb on - strand, within GFF4862at 233.913 kb on + strand, within GFF4862at 233.914 kb on - strand, within GFF4862at 234.063 kb on - strandat 234.081 kb on + strandat 234.081 kb on + strandat 234.082 kb on - strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.149 kb on + strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.150 kb on - strandat 234.153 kb on + strandat 234.153 kb on + strandat 234.153 kb on + strandat 234.153 kb on + strandat 234.153 kb on + strandat 234.154 kb on - strandat 234.154 kb on - strandat 234.297 kb on - strandat 234.297 kb on - strandat 234.326 kb on + strandat 234.326 kb on + strandat 234.326 kb on + strandat 234.326 kb on + strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.327 kb on - strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.332 kb on + strandat 234.333 kb on - strandat 234.333 kb on - strandat 234.333 kb on - strandat 234.333 kb on - strandat 234.333 kb on - strandat 234.344 kb on + strand, within GFF4863at 234.345 kb on - strand, within GFF4863at 234.345 kb on - strand, within GFF4863at 234.345 kb on - strand, within GFF4863at 234.345 kb on - strand, within GFF4863at 234.449 kb on + strand, within GFF4863at 234.449 kb on + strand, within GFF4863at 234.449 kb on + strand, within GFF4863at 234.449 kb on + strand, within GFF4863at 234.450 kb on - strand, within GFF4863at 234.450 kb on - strand, within GFF4863at 234.450 kb on - strand, within GFF4863at 234.521 kb on + strand, within GFF4863at 234.521 kb on + strand, within GFF4863at 234.521 kb on + strand, within GFF4863at 234.521 kb on + strand, within GFF4863at 234.522 kb on - strand, within GFF4863at 234.522 kb on - strand, within GFF4863at 234.522 kb on - strand, within GFF4863at 234.548 kb on + strand, within GFF4863at 234.548 kb on + strand, within GFF4863at 234.548 kb on + strand, within GFF4863at 234.548 kb on + strand, within GFF4863at 234.548 kb on + strand, within GFF4863at 234.549 kb on - strand, within GFF4863at 234.549 kb on - strand, within GFF4863at 234.549 kb on - strand, within GFF4863at 234.573 kb on + strand, within GFF4863at 234.574 kb on - strand, within GFF4863at 234.683 kb on + strand, within GFF4863at 234.683 kb on + strand, within GFF4863at 234.683 kb on + strand, within GFF4863at 234.683 kb on + strand, within GFF4863at 234.684 kb on - strand, within GFF4863at 234.684 kb on - strand, within GFF4863at 234.684 kb on - strand, within GFF4863at 234.749 kb on + strand, within GFF4863at 234.750 kb on - strand, within GFF4863at 234.750 kb on - strand, within GFF4863at 234.761 kb on + strand, within GFF4863at 234.761 kb on + strand, within GFF4863at 234.761 kb on + strand, within GFF4863at 234.761 kb on + strand, within GFF4863at 234.761 kb on + strand, within GFF4863at 234.762 kb on - strand, within GFF4863at 234.762 kb on - strand, within GFF4863at 234.762 kb on - strand, within GFF4863at 234.762 kb on - strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.797 kb on + strand, within GFF4863at 234.798 kb on - strand, within GFF4863at 234.800 kb on + strand, within GFF4863at 234.800 kb on + strand, within GFF4863at 234.800 kb on + strand, within GFF4863at 234.800 kb on + strand, within GFF4863at 234.801 kb on - strand, within GFF4863at 234.801 kb on - strand, within GFF4863at 234.801 kb on - strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.818 kb on + strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.819 kb on - strand, within GFF4863at 234.965 kb on + strand, within GFF4863at 234.965 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.064 kb on + strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.065 kb on - strand, within GFF4863at 235.157 kb on + strand, within GFF4863at 235.158 kb on - strand, within GFF4863at 235.158 kb on - strand, within GFF4863at 235.190 kb on + strand, within GFF4863at 235.190 kb on + strand, within GFF4863at 235.318 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.412 kb on + strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.413 kb on - strand, within GFF4863at 235.499 kb on + strand, within GFF4863at 235.499 kb on + strand, within GFF4863at 235.500 kb on - strand, within GFF4863at 236.089 kb on + strand, within GFF4864at 236.089 kb on + strand, within GFF4864at 236.090 kb on - strand, within GFF4864at 236.199 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.289 kb on + strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.290 kb on - strand, within GFF4864at 236.314 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864at 236.659 kb on - strand, within GFF4864

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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233,457 + GFF4862 0.33 -0.0
233,458 - GFF4862 0.34 +0.1
233,458 - GFF4862 0.34 +0.3
233,523 + GFF4862 0.40 -0.5
233,523 + GFF4862 0.40 -0.4
233,523 + GFF4862 0.40 +0.6
233,523 + GFF4862 0.40 -0.2
233,523 + GFF4862 0.40 -0.8
233,524 - GFF4862 0.40 +2.2
233,524 - GFF4862 0.40 +0.3
233,524 - GFF4862 0.40 -0.3
233,524 - GFF4862 0.40 -0.1
233,524 - GFF4862 0.40 +1.2
233,524 - GFF4862 0.40 +0.4
233,524 - GFF4862 0.40 +1.2
233,593 + GFF4862 0.46 +1.6
233,796 + GFF4862 0.66 -0.4
233,796 + GFF4862 0.66 +0.5
233,796 + GFF4862 0.66 -0.3
233,796 + GFF4862 0.66 +0.4
233,796 + GFF4862 0.66 -1.2
233,796 + GFF4862 0.66 -0.9
233,796 + GFF4862 0.66 +0.5
233,797 - GFF4862 0.66 -0.4
233,797 - GFF4862 0.66 -0.6
233,797 - GFF4862 0.66 +0.4
233,797 - GFF4862 0.66 +0.1
233,797 - GFF4862 0.66 -0.4
233,797 - GFF4862 0.66 -1.0
233,797 - GFF4862 0.66 -0.4
233,803 + GFF4862 0.66 +0.2
233,803 + GFF4862 0.66 -0.3
233,803 + GFF4862 0.66 -0.0
233,803 + GFF4862 0.66 -2.0
233,803 + GFF4862 0.66 -0.3
233,803 + GFF4862 0.66 +0.2
233,804 - GFF4862 0.66 +1.1
233,804 - GFF4862 0.66 -0.3
233,804 - GFF4862 0.66 +1.6
233,804 - GFF4862 0.66 +0.7
233,804 - GFF4862 0.66 +0.8
233,804 - GFF4862 0.66 -1.3
233,804 - GFF4862 0.66 -1.1
233,804 - GFF4862 0.66 -1.1
233,804 - GFF4862 0.66 -0.3
233,804 - GFF4862 0.66 -0.4
233,804 - GFF4862 0.66 +0.8
233,805 + GFF4862 0.67 -0.5
233,805 + GFF4862 0.67 -1.2
233,805 + GFF4862 0.67 -1.6
233,805 + GFF4862 0.67 -0.9
233,805 + GFF4862 0.67 +0.5
233,805 + GFF4862 0.67 +0.2
233,805 + GFF4862 0.67 -0.0
233,805 + GFF4862 0.67 -1.1
233,805 + GFF4862 0.67 -0.3
233,805 + GFF4862 0.67 +0.4
233,805 + GFF4862 0.67 +0.4
233,806 - GFF4862 0.67 +0.6
233,806 - GFF4862 0.67 -0.2
233,806 - GFF4862 0.67 -0.7
233,806 - GFF4862 0.67 -0.0
233,806 - GFF4862 0.67 +0.1
233,806 - GFF4862 0.67 +0.6
233,806 - GFF4862 0.67 -0.4
233,806 - GFF4862 0.67 +0.4
233,806 - GFF4862 0.67 +0.4
233,806 - GFF4862 0.67 -0.4
233,913 + GFF4862 0.77 +0.4
233,914 - GFF4862 0.77 -0.2
234,063 - -0.3
234,081 + +0.7
234,081 + +0.6
234,082 - +0.9
234,149 + -0.9
234,149 + -0.2
234,149 + -1.3
234,149 + +0.4
234,149 + +0.4
234,149 + +0.6
234,149 + +0.8
234,149 + +0.2
234,150 - -0.5
234,150 - +0.4
234,150 - -0.3
234,150 - +0.6
234,150 - -0.7
234,150 - -0.3
234,150 - +0.4
234,150 - +0.6
234,150 - -1.6
234,150 - +0.7
234,150 - -0.5
234,150 - +0.4
234,150 - -1.4
234,150 - -0.3
234,153 + -0.3
234,153 + -2.5
234,153 + -0.1
234,153 + -0.3
234,153 + +0.3
234,154 - -0.1
234,154 - -0.6
234,297 - -0.4
234,297 - +0.5
234,326 + -0.9
234,326 + -0.4
234,326 + -0.4
234,326 + +0.8
234,327 - +2.0
234,327 - +0.2
234,327 - +0.6
234,327 - +1.6
234,327 - -0.3
234,327 - -0.6
234,327 - -0.2
234,327 - -0.0
234,332 + -0.4
234,332 + +0.5
234,332 + -1.8
234,332 + -1.6
234,332 + -0.4
234,332 + +1.6
234,332 + +0.2
234,332 + -0.5
234,332 + -0.6
234,332 + -1.0
234,333 - +1.1
234,333 - -0.0
234,333 - -0.4
234,333 - -0.7
234,333 - -0.4
234,344 + GFF4863 0.11 -0.8
234,345 - GFF4863 0.11 -0.4
234,345 - GFF4863 0.11 -0.4
234,345 - GFF4863 0.11 -0.4
234,345 - GFF4863 0.11 +1.4
234,449 + GFF4863 0.17 +1.1
234,449 + GFF4863 0.17 +0.6
234,449 + GFF4863 0.17 -0.1
234,449 + GFF4863 0.17 -0.2
234,450 - GFF4863 0.17 -0.2
234,450 - GFF4863 0.17 -0.0
234,450 - GFF4863 0.17 -0.5
234,521 + GFF4863 0.21 +0.3
234,521 + GFF4863 0.21 -0.2
234,521 + GFF4863 0.21 -0.2
234,521 + GFF4863 0.21 -0.7
234,522 - GFF4863 0.21 -0.3
234,522 - GFF4863 0.21 +1.0
234,522 - GFF4863 0.21 +1.4
234,548 + GFF4863 0.23 -1.2
234,548 + GFF4863 0.23 -2.6
234,548 + GFF4863 0.23 -1.0
234,548 + GFF4863 0.23 +0.1
234,548 + GFF4863 0.23 -0.1
234,549 - GFF4863 0.23 +0.3
234,549 - GFF4863 0.23 +0.6
234,549 - GFF4863 0.23 -0.9
234,573 + GFF4863 0.24 -1.2
234,574 - GFF4863 0.24 -0.4
234,683 + GFF4863 0.31 -0.1
234,683 + GFF4863 0.31 -0.4
234,683 + GFF4863 0.31 +0.1
234,683 + GFF4863 0.31 -0.0
234,684 - GFF4863 0.31 +0.8
234,684 - GFF4863 0.31 -1.0
234,684 - GFF4863 0.31 +0.3
234,749 + GFF4863 0.35 +0.1
234,750 - GFF4863 0.35 +0.8
234,750 - GFF4863 0.35 -1.0
234,761 + GFF4863 0.35 +1.1
234,761 + GFF4863 0.35 -0.8
234,761 + GFF4863 0.35 +0.4
234,761 + GFF4863 0.35 +0.2
234,761 + GFF4863 0.35 -0.8
234,762 - GFF4863 0.35 +0.4
234,762 - GFF4863 0.35 -0.5
234,762 - GFF4863 0.35 +0.6
234,762 - GFF4863 0.35 -0.0
234,797 + GFF4863 0.38 +1.0
234,797 + GFF4863 0.38 -0.5
234,797 + GFF4863 0.38 -0.3
234,797 + GFF4863 0.38 -0.1
234,797 + GFF4863 0.38 +0.2
234,797 + GFF4863 0.38 -0.3
234,797 + GFF4863 0.38 -0.5
234,798 - GFF4863 0.38 -0.2
234,800 + GFF4863 0.38 -0.5
234,800 + GFF4863 0.38 +0.8
234,800 + GFF4863 0.38 -0.8
234,800 + GFF4863 0.38 -0.3
234,801 - GFF4863 0.38 -0.3
234,801 - GFF4863 0.38 -0.0
234,801 - GFF4863 0.38 -0.5
234,818 + GFF4863 0.39 +0.8
234,818 + GFF4863 0.39 -0.9
234,818 + GFF4863 0.39 -1.5
234,818 + GFF4863 0.39 +1.1
234,818 + GFF4863 0.39 -1.4
234,818 + GFF4863 0.39 +0.3
234,818 + GFF4863 0.39 -0.5
234,818 + GFF4863 0.39 +0.2
234,818 + GFF4863 0.39 +0.6
234,818 + GFF4863 0.39 -1.0
234,819 - GFF4863 0.39 -1.2
234,819 - GFF4863 0.39 -0.2
234,819 - GFF4863 0.39 +0.4
234,819 - GFF4863 0.39 -0.4
234,819 - GFF4863 0.39 +0.3
234,819 - GFF4863 0.39 +0.6
234,819 - GFF4863 0.39 -0.5
234,819 - GFF4863 0.39 -1.5
234,965 + GFF4863 0.48 +1.0
234,965 + GFF4863 0.48 +0.2
235,064 + GFF4863 0.53 -1.2
235,064 + GFF4863 0.53 -0.0
235,064 + GFF4863 0.53 -0.6
235,064 + GFF4863 0.53 +0.8
235,064 + GFF4863 0.53 -0.1
235,064 + GFF4863 0.53 -0.4
235,065 - GFF4863 0.54 -0.1
235,065 - GFF4863 0.54 +1.0
235,065 - GFF4863 0.54 -0.6
235,065 - GFF4863 0.54 -0.5
235,065 - GFF4863 0.54 -0.1
235,065 - GFF4863 0.54 -0.4
235,157 + GFF4863 0.59 -0.5
235,158 - GFF4863 0.59 -0.6
235,158 - GFF4863 0.59 -0.7
235,190 + GFF4863 0.61 +0.4
235,190 + GFF4863 0.61 +0.7
235,318 + GFF4863 0.69 -1.4
235,412 + GFF4863 0.74 -0.9
235,412 + GFF4863 0.74 +1.0
235,412 + GFF4863 0.74 -0.1
235,413 - GFF4863 0.74 -0.3
235,413 - GFF4863 0.74 -1.2
235,413 - GFF4863 0.74 -0.5
235,413 - GFF4863 0.74 -2.7
235,413 - GFF4863 0.74 -0.7
235,499 + GFF4863 0.79 -0.5
235,499 + GFF4863 0.79 -2.0
235,500 - GFF4863 0.79 +0.6
236,089 + GFF4864 0.18 -1.0
236,089 + GFF4864 0.18 -2.1
236,090 - GFF4864 0.18 -0.2
236,199 + GFF4864 0.28 +0.1
236,289 + GFF4864 0.35 -0.5
236,289 + GFF4864 0.35 -0.1
236,289 + GFF4864 0.35 -0.2
236,289 + GFF4864 0.35 -0.3
236,289 + GFF4864 0.35 -1.1
236,289 + GFF4864 0.35 -0.9
236,290 - GFF4864 0.35 -0.1
236,290 - GFF4864 0.35 +0.2
236,290 - GFF4864 0.35 +2.3
236,314 - GFF4864 0.37 +0.4
236,659 - GFF4864 0.67 -1.1
236,659 - GFF4864 0.67 -1.6

Or see this region's nucleotide sequence