Strain Fitness in Variovorax sp. SCN45 around GFF4784

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4783 and GFF4784 are separated by 104 nucleotidesGFF4784 and GFF4785 are separated by 18 nucleotides GFF4783 - Penicillin acylase (EC 3.5.1.11), at 150,654 to 153,146 GFF4783 GFF4784 - no description, at 153,251 to 154,306 GFF4784 GFF4785 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 154,325 to 156,934 GFF4785 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 152.299 kb on - strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.547 kb on + strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.548 kb on - strand, within GFF4783at 152.907 kb on + strandat 152.908 kb on - strandat 152.908 kb on - strandat 152.923 kb on - strandat 152.923 kb on - strandat 153.033 kb on + strandat 153.034 kb on - strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.069 kb on + strandat 153.070 kb on - strandat 153.070 kb on - strandat 153.070 kb on - strandat 153.084 kb on + strandat 153.085 kb on - strandat 153.144 kb on + strandat 153.213 kb on + strandat 153.307 kb on + strandat 153.307 kb on + strandat 153.307 kb on + strandat 153.410 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.468 kb on + strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.469 kb on - strand, within GFF4784at 153.485 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.581 kb on + strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.582 kb on - strand, within GFF4784at 153.655 kb on + strand, within GFF4784at 153.665 kb on + strand, within GFF4784at 153.666 kb on - strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.674 kb on + strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.675 kb on - strand, within GFF4784at 153.679 kb on + strand, within GFF4784at 153.681 kb on + strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.682 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.722 kb on - strand, within GFF4784at 153.803 kb on + strand, within GFF4784at 153.804 kb on - strand, within GFF4784at 153.997 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.010 kb on + strand, within GFF4784at 154.011 kb on - strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.064 kb on + strand, within GFF4784at 154.065 kb on - strand, within GFF4784at 154.144 kb on + strand, within GFF4784at 154.145 kb on - strand, within GFF4784at 154.185 kb on + strand, within GFF4784at 154.327 kb on - strandat 154.327 kb on - strandat 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.716 kb on + strand, within GFF4785at 154.717 kb on - strand, within GFF4785at 154.717 kb on - strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.962 kb on + strand, within GFF4785at 154.963 kb on - strand, within GFF4785at 155.073 kb on + strand, within GFF4785at 155.074 kb on - strand, within GFF4785at 155.074 kb on - strand, within GFF4785at 155.100 kb on + strand, within GFF4785at 155.100 kb on + strand, within GFF4785at 155.101 kb on - strand, within GFF4785at 155.101 kb on - strand, within GFF4785at 155.101 kb on - strand, within GFF4785

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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152,299 - GFF4783 0.66 +0.3
152,547 + GFF4783 0.76 +0.1
152,547 + GFF4783 0.76 +0.4
152,547 + GFF4783 0.76 +0.4
152,547 + GFF4783 0.76 +0.1
152,547 + GFF4783 0.76 -1.4
152,547 + GFF4783 0.76 +0.6
152,548 - GFF4783 0.76 -0.7
152,548 - GFF4783 0.76 -0.3
152,548 - GFF4783 0.76 -0.5
152,907 + +0.2
152,908 - -1.2
152,908 - -1.3
152,923 - +0.3
152,923 - +0.8
153,033 + -0.7
153,034 - +0.7
153,069 + +0.3
153,069 + +0.8
153,069 + +0.4
153,069 + -0.4
153,070 - -1.3
153,070 - -0.4
153,070 - -2.2
153,084 + +0.4
153,085 - +0.1
153,144 + +1.0
153,213 + +0.4
153,307 + +0.2
153,307 + -1.1
153,307 + +0.3
153,410 + GFF4784 0.15 +0.6
153,468 + GFF4784 0.21 -0.6
153,468 + GFF4784 0.21 -0.3
153,468 + GFF4784 0.21 -0.3
153,469 - GFF4784 0.21 -0.2
153,469 - GFF4784 0.21 -0.9
153,469 - GFF4784 0.21 -0.1
153,485 + GFF4784 0.22 -0.6
153,581 + GFF4784 0.31 -0.8
153,581 + GFF4784 0.31 -0.5
153,581 + GFF4784 0.31 -1.4
153,581 + GFF4784 0.31 -0.9
153,582 - GFF4784 0.31 +0.2
153,582 - GFF4784 0.31 +0.1
153,655 + GFF4784 0.38 -0.3
153,665 + GFF4784 0.39 -1.0
153,666 - GFF4784 0.39 +1.7
153,674 + GFF4784 0.40 +0.3
153,674 + GFF4784 0.40 -0.2
153,674 + GFF4784 0.40 -0.3
153,674 + GFF4784 0.40 +0.2
153,674 + GFF4784 0.40 +0.4
153,674 + GFF4784 0.40 -0.0
153,674 + GFF4784 0.40 +1.2
153,674 + GFF4784 0.40 -0.6
153,674 + GFF4784 0.40 +0.8
153,674 + GFF4784 0.40 +0.6
153,674 + GFF4784 0.40 -0.7
153,674 + GFF4784 0.40 -0.1
153,674 + GFF4784 0.40 +0.6
153,674 + GFF4784 0.40 -0.4
153,674 + GFF4784 0.40 +0.4
153,674 + GFF4784 0.40 +0.4
153,674 + GFF4784 0.40 +0.3
153,674 + GFF4784 0.40 +0.5
153,674 + GFF4784 0.40 -0.2
153,675 - GFF4784 0.40 +0.3
153,675 - GFF4784 0.40 -0.6
153,675 - GFF4784 0.40 +0.1
153,675 - GFF4784 0.40 +1.4
153,675 - GFF4784 0.40 +0.5
153,675 - GFF4784 0.40 -0.2
153,675 - GFF4784 0.40 -0.2
153,675 - GFF4784 0.40 +0.6
153,675 - GFF4784 0.40 +1.0
153,675 - GFF4784 0.40 -0.8
153,675 - GFF4784 0.40 -0.6
153,675 - GFF4784 0.40 -0.7
153,675 - GFF4784 0.40 -2.0
153,675 - GFF4784 0.40 -0.4
153,675 - GFF4784 0.40 -1.5
153,675 - GFF4784 0.40 -0.7
153,675 - GFF4784 0.40 -0.1
153,675 - GFF4784 0.40 -0.2
153,675 - GFF4784 0.40 +0.7
153,679 + GFF4784 0.41 -0.4
153,681 + GFF4784 0.41 -1.4
153,682 - GFF4784 0.41 +0.3
153,682 - GFF4784 0.41 +0.1
153,682 - GFF4784 0.41 -0.2
153,682 - GFF4784 0.41 -1.4
153,682 - GFF4784 0.41 -1.2
153,722 - GFF4784 0.45 -0.2
153,722 - GFF4784 0.45 +0.1
153,722 - GFF4784 0.45 -1.7
153,803 + GFF4784 0.52 -0.6
153,804 - GFF4784 0.52 -0.0
153,997 + GFF4784 0.71 +0.8
154,010 + GFF4784 0.72 +3.2
154,010 + GFF4784 0.72 -1.9
154,010 + GFF4784 0.72 +0.1
154,010 + GFF4784 0.72 +1.3
154,010 + GFF4784 0.72 -0.3
154,010 + GFF4784 0.72 +0.1
154,011 - GFF4784 0.72 +0.1
154,064 + GFF4784 0.77 +0.3
154,064 + GFF4784 0.77 -0.2
154,064 + GFF4784 0.77 +0.4
154,065 - GFF4784 0.77 +0.4
154,144 + GFF4784 0.85 -0.1
154,145 - GFF4784 0.85 -0.7
154,185 + GFF4784 0.88 +0.9
154,327 - -0.2
154,327 - -0.4
154,716 + GFF4785 0.15 +0.0
154,716 + GFF4785 0.15 -0.1
154,716 + GFF4785 0.15 +2.0
154,716 + GFF4785 0.15 +0.3
154,716 + GFF4785 0.15 -1.1
154,716 + GFF4785 0.15 +3.9
154,716 + GFF4785 0.15 -0.9
154,717 - GFF4785 0.15 -0.2
154,717 - GFF4785 0.15 -0.6
154,962 + GFF4785 0.24 -0.5
154,962 + GFF4785 0.24 -0.4
154,962 + GFF4785 0.24 -0.3
154,963 - GFF4785 0.24 -0.0
155,073 + GFF4785 0.29 -0.7
155,074 - GFF4785 0.29 -1.8
155,074 - GFF4785 0.29 +0.4
155,100 + GFF4785 0.30 -0.2
155,100 + GFF4785 0.30 -0.7
155,101 - GFF4785 0.30 -0.1
155,101 - GFF4785 0.30 -0.3
155,101 - GFF4785 0.30 -0.3

Or see this region's nucleotide sequence