Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4772 and GFF4773 are separated by 268 nucleotides GFF4773 and GFF4774 are separated by 1 nucleotides GFF4774 and GFF4775 are separated by 64 nucleotides
GFF4772 - D-mannose isomerase (EC 5.3.1.7), at 140,220 to 141,428
GFF4772
GFF4773 - Broad-specificity amino acid ABC transporter, ATP-binding protein 1, at 141,697 to 142,467
GFF4773
GFF4774 - Broad-specificity amino acid ABC transporter, ATP-binding protein 2, at 142,469 to 143,176
GFF4774
GFF4775 - Broad-specificity amino acid ABC transporter, substrate-binding protein, at 143,241 to 144,437
GFF4775
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.732 kb on - strand, within GFF4772 at 140.732 kb on - strand, within GFF4772 at 140.732 kb on - strand, within GFF4772 at 140.761 kb on + strand, within GFF4772 at 140.761 kb on + strand, within GFF4772 at 140.866 kb on + strand, within GFF4772 at 140.867 kb on - strand, within GFF4772 at 140.957 kb on - strand, within GFF4772 at 141.085 kb on + strand, within GFF4772 at 141.085 kb on + strand, within GFF4772 at 141.086 kb on - strand, within GFF4772 at 141.148 kb on + strand, within GFF4772 at 141.149 kb on - strand, within GFF4772 at 141.149 kb on - strand, within GFF4772 at 141.239 kb on - strand, within GFF4772 at 141.301 kb on + strand, within GFF4772 at 141.301 kb on + strand, within GFF4772 at 141.302 kb on - strand, within GFF4772 at 141.302 kb on - strand, within GFF4772 at 141.323 kb on - strand at 141.323 kb on - strand at 141.368 kb on - strand at 141.368 kb on - strand at 141.368 kb on - strand at 141.443 kb on - strand at 141.443 kb on - strand at 141.443 kb on - strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.573 kb on + strand at 141.574 kb on - strand at 141.589 kb on + strand at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.353 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.426 kb on + strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.085 kb on - strand, within GFF4774 at 143.358 kb on + strand at 143.358 kb on + strand at 143.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 140,732 - GFF4772 0.42 +0.2 140,732 - GFF4772 0.42 -0.5 140,732 - GFF4772 0.42 -0.4 140,761 + GFF4772 0.45 -0.5 140,761 + GFF4772 0.45 -0.2 140,866 + GFF4772 0.53 -0.3 140,867 - GFF4772 0.54 +0.6 140,957 - GFF4772 0.61 -0.6 141,085 + GFF4772 0.72 -2.6 141,085 + GFF4772 0.72 -0.7 141,086 - GFF4772 0.72 -0.3 141,148 + GFF4772 0.77 -1.2 141,149 - GFF4772 0.77 +0.4 141,149 - GFF4772 0.77 -0.3 141,239 - GFF4772 0.84 +0.3 141,301 + GFF4772 0.89 +0.6 141,301 + GFF4772 0.89 -0.4 141,302 - GFF4772 0.89 +0.8 141,302 - GFF4772 0.89 -0.4 141,323 - -0.4 141,323 - -0.4 141,368 - -0.7 141,368 - -0.0 141,368 - -0.2 141,443 - -0.0 141,443 - +1.0 141,443 - +0.3 141,487 + -0.4 141,487 + -0.1 141,487 + -0.0 141,487 + -0.2 141,487 + -0.4 141,487 + +0.3 141,488 - -2.4 141,488 - -0.7 141,488 - -1.1 141,488 - +1.3 141,488 - -0.4 141,488 - -2.0 141,573 + -0.2 141,574 - +1.2 141,589 + +0.6 142,033 + GFF4773 0.44 -1.2 142,033 + GFF4773 0.44 +1.2 142,033 + GFF4773 0.44 -0.1 142,034 - GFF4773 0.44 -0.1 142,034 - GFF4773 0.44 +1.4 142,353 - GFF4773 0.85 +2.4 142,388 - GFF4773 0.90 -1.0 142,388 - GFF4773 0.90 -0.7 142,426 + +0.2 142,427 - -0.8 142,427 - +0.7 142,427 - +0.2 142,427 - -0.4 142,823 + GFF4774 0.50 +0.6 142,823 + GFF4774 0.50 +0.6 142,823 + GFF4774 0.50 +1.0 142,823 + GFF4774 0.50 +0.1 142,823 + GFF4774 0.50 +0.1 142,824 - GFF4774 0.50 +0.3 142,824 - GFF4774 0.50 +0.8 142,824 - GFF4774 0.50 -0.9 142,824 - GFF4774 0.50 -0.7 142,824 - GFF4774 0.50 +0.1 142,824 - GFF4774 0.50 -1.3 142,824 - GFF4774 0.50 -0.2 143,024 + GFF4774 0.78 -0.2 143,024 + GFF4774 0.78 -0.2 143,024 + GFF4774 0.78 -0.4 143,024 + GFF4774 0.78 -0.5 143,025 - GFF4774 0.79 +2.6 143,025 - GFF4774 0.79 -0.3 143,085 - GFF4774 0.87 -0.6 143,358 + -0.7 143,358 + -0.8 143,359 - -0.4
Or see this region's nucleotide sequence