Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4717 and GFF4718 are separated by 1 nucleotides GFF4718 and GFF4719 are separated by 16 nucleotides GFF4719 and GFF4720 overlap by 4 nucleotides
GFF4717 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 79,393 to 80,190
GFF4717
GFF4718 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 80,192 to 80,962
GFF4718
GFF4719 - hypothetical protein, at 80,979 to 81,647
GFF4719
GFF4720 - Putrescine transport system permease protein potI, at 81,644 to 82,534
GFF4720
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 80.044 kb on + strand, within GFF4717 at 80.045 kb on - strand, within GFF4717 at 80.045 kb on - strand, within GFF4717 at 80.074 kb on + strand, within GFF4717 at 80.074 kb on + strand, within GFF4717 at 80.075 kb on - strand, within GFF4717 at 80.075 kb on - strand, within GFF4717 at 80.075 kb on - strand, within GFF4717 at 80.075 kb on - strand, within GFF4717 at 80.075 kb on - strand, within GFF4717 at 80.093 kb on - strand, within GFF4717 at 80.093 kb on - strand, within GFF4717 at 80.093 kb on - strand, within GFF4717 at 80.113 kb on + strand at 80.114 kb on - strand at 80.114 kb on - strand at 80.114 kb on - strand at 80.114 kb on - strand at 80.114 kb on - strand at 80.179 kb on + strand at 80.621 kb on + strand, within GFF4718 at 80.621 kb on + strand, within GFF4718 at 80.622 kb on - strand, within GFF4718 at 80.622 kb on - strand, within GFF4718 at 80.622 kb on - strand, within GFF4718 at 80.622 kb on - strand, within GFF4718 at 80.960 kb on + strand at 80.961 kb on - strand at 80.961 kb on - strand at 80.961 kb on - strand at 81.238 kb on - strand, within GFF4719 at 81.238 kb on - strand, within GFF4719 at 81.238 kb on - strand, within GFF4719 at 81.238 kb on - strand, within GFF4719 at 81.386 kb on + strand, within GFF4719 at 81.433 kb on + strand, within GFF4719 at 81.434 kb on - strand, within GFF4719 at 81.434 kb on - strand, within GFF4719 at 81.562 kb on - strand, within GFF4719 at 81.744 kb on + strand, within GFF4720 at 81.744 kb on + strand, within GFF4720 at 81.745 kb on - strand, within GFF4720 at 81.748 kb on + strand, within GFF4720 at 81.748 kb on + strand, within GFF4720 at 81.749 kb on - strand, within GFF4720 at 81.749 kb on - strand, within GFF4720 at 81.749 kb on - strand, within GFF4720 at 81.749 kb on - strand, within GFF4720 at 81.749 kb on - strand, within GFF4720 at 81.960 kb on + strand, within GFF4720 at 81.961 kb on - strand, within GFF4720 at 82.071 kb on + strand, within GFF4720 at 82.194 kb on - strand, within GFF4720 at 82.452 kb on + strand at 82.520 kb on + strand at 82.520 kb on + strand at 82.521 kb on - strand at 82.521 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80,044 + GFF4717 0.82 -0.2 80,045 - GFF4717 0.82 +0.3 80,045 - GFF4717 0.82 +0.8 80,074 + GFF4717 0.85 -0.5 80,074 + GFF4717 0.85 -1.9 80,075 - GFF4717 0.85 -0.0 80,075 - GFF4717 0.85 -0.4 80,075 - GFF4717 0.85 +0.3 80,075 - GFF4717 0.85 -0.4 80,075 - GFF4717 0.85 -1.2 80,093 - GFF4717 0.88 -0.1 80,093 - GFF4717 0.88 -1.1 80,093 - GFF4717 0.88 +0.6 80,113 + +0.2 80,114 - -0.3 80,114 - -0.1 80,114 - -0.1 80,114 - -0.5 80,114 - -0.6 80,179 + -1.7 80,621 + GFF4718 0.56 -1.8 80,621 + GFF4718 0.56 +0.2 80,622 - GFF4718 0.56 -0.8 80,622 - GFF4718 0.56 +0.3 80,622 - GFF4718 0.56 +0.4 80,622 - GFF4718 0.56 +0.2 80,960 + +0.4 80,961 - -0.4 80,961 - -0.1 80,961 - -1.6 81,238 - GFF4719 0.39 +0.6 81,238 - GFF4719 0.39 +0.8 81,238 - GFF4719 0.39 +0.4 81,238 - GFF4719 0.39 +1.0 81,386 + GFF4719 0.61 -0.3 81,433 + GFF4719 0.68 -1.0 81,434 - GFF4719 0.68 -0.0 81,434 - GFF4719 0.68 -0.7 81,562 - GFF4719 0.87 +0.3 81,744 + GFF4720 0.11 +0.3 81,744 + GFF4720 0.11 -0.5 81,745 - GFF4720 0.11 -0.5 81,748 + GFF4720 0.12 +1.0 81,748 + GFF4720 0.12 +0.2 81,749 - GFF4720 0.12 -1.1 81,749 - GFF4720 0.12 +0.8 81,749 - GFF4720 0.12 -0.2 81,749 - GFF4720 0.12 -0.5 81,749 - GFF4720 0.12 -0.1 81,960 + GFF4720 0.35 +1.2 81,961 - GFF4720 0.36 -0.5 82,071 + GFF4720 0.48 +1.8 82,194 - GFF4720 0.62 -2.9 82,452 + +0.4 82,520 + -0.2 82,520 + +0.0 82,521 - -0.0 82,521 - +0.3 82,613 - -0.4 82,613 - -1.2
Or see this region's nucleotide sequence