Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4713 and GFF4714 are separated by 11 nucleotides GFF4714 and GFF4715 overlap by 1 nucleotides GFF4715 and GFF4716 are separated by 147 nucleotides GFF4716 and GFF4717 are separated by 10 nucleotides
GFF4713 - Uncharacterized protein YhiN, at 75,263 to 76,468
GFF4713
GFF4714 - putative lipoprotein, at 76,480 to 77,271
GFF4714
GFF4715 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 77,271 to 78,401
GFF4715
GFF4716 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 78,549 to 79,382
GFF4716
GFF4717 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 79,393 to 80,190
GFF4717
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.517 kb on + strand at 76.518 kb on - strand at 76.518 kb on - strand at 76.518 kb on - strand at 76.535 kb on + strand at 76.535 kb on + strand at 76.535 kb on + strand at 76.536 kb on - strand at 76.536 kb on - strand at 76.536 kb on - strand at 76.653 kb on - strand, within GFF4714 at 76.653 kb on - strand, within GFF4714 at 76.653 kb on - strand, within GFF4714 at 76.736 kb on + strand, within GFF4714 at 76.736 kb on + strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.737 kb on - strand, within GFF4714 at 76.826 kb on + strand, within GFF4714 at 76.826 kb on + strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.827 kb on - strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.997 kb on + strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 76.998 kb on - strand, within GFF4714 at 77.212 kb on + strand at 77.212 kb on + strand at 77.213 kb on - strand at 77.326 kb on + strand at 77.327 kb on - strand at 77.327 kb on - strand at 77.327 kb on - strand at 77.344 kb on + strand at 77.344 kb on + strand at 77.344 kb on + strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.345 kb on - strand at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.392 kb on + strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.393 kb on - strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.407 kb on + strand, within GFF4715 at 77.408 kb on - strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.419 kb on + strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.420 kb on - strand, within GFF4715 at 77.488 kb on + strand, within GFF4715 at 77.489 kb on - strand, within GFF4715 at 77.489 kb on - strand, within GFF4715 at 77.489 kb on - strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.560 kb on + strand, within GFF4715 at 77.561 kb on - strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.596 kb on + strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.597 kb on - strand, within GFF4715 at 77.728 kb on + strand, within GFF4715 at 77.728 kb on + strand, within GFF4715 at 77.729 kb on - strand, within GFF4715 at 77.729 kb on - strand, within GFF4715 at 77.746 kb on + strand, within GFF4715 at 77.746 kb on + strand, within GFF4715 at 77.747 kb on - strand, within GFF4715 at 77.747 kb on - strand, within GFF4715 at 77.747 kb on - strand, within GFF4715 at 77.747 kb on - strand, within GFF4715 at 78.043 kb on + strand, within GFF4715 at 78.043 kb on + strand, within GFF4715 at 78.043 kb on + strand, within GFF4715 at 78.043 kb on + strand, within GFF4715 at 78.043 kb on + strand, within GFF4715 at 78.208 kb on + strand, within GFF4715 at 78.208 kb on + strand, within GFF4715 at 78.208 kb on + strand, within GFF4715 at 78.208 kb on + strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.209 kb on - strand, within GFF4715 at 78.229 kb on + strand, within GFF4715 at 78.229 kb on + strand, within GFF4715 at 78.229 kb on + strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.230 kb on - strand, within GFF4715 at 78.259 kb on + strand, within GFF4715 at 78.260 kb on - strand, within GFF4715 at 78.260 kb on - strand, within GFF4715 at 78.260 kb on - strand, within GFF4715 at 78.260 kb on - strand, within GFF4715 at 78.260 kb on - strand, within GFF4715 at 78.447 kb on - strand at 78.510 kb on + strand at 78.511 kb on - strand at 78.511 kb on - strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.518 kb on + strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.519 kb on - strand at 78.520 kb on + strand at 78.521 kb on - strand at 78.531 kb on + strand at 78.531 kb on + strand at 78.531 kb on + strand at 78.531 kb on + strand at 78.532 kb on - strand at 78.532 kb on - strand at 78.702 kb on + strand, within GFF4716 at 78.795 kb on + strand, within GFF4716 at 78.795 kb on + strand, within GFF4716 at 78.795 kb on + strand, within GFF4716 at 78.795 kb on + strand, within GFF4716 at 78.796 kb on - strand, within GFF4716 at 78.796 kb on - strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.927 kb on + strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 78.928 kb on - strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.185 kb on + strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.186 kb on - strand, within GFF4716 at 79.203 kb on + strand, within GFF4716
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 76,517 + -0.3 76,517 + +2.6 76,517 + +1.0 76,517 + -0.7 76,517 + -0.0 76,517 + -1.6 76,517 + +0.1 76,517 + -1.3 76,518 - +0.1 76,518 - +0.3 76,518 - +1.0 76,535 + -0.8 76,535 + +0.5 76,535 + -0.7 76,536 - -0.2 76,536 - -0.2 76,536 - +0.3 76,653 - GFF4714 0.22 -1.1 76,653 - GFF4714 0.22 -0.5 76,653 - GFF4714 0.22 -0.7 76,736 + GFF4714 0.32 -1.4 76,736 + GFF4714 0.32 +0.2 76,737 - GFF4714 0.32 -0.6 76,737 - GFF4714 0.32 -0.8 76,737 - GFF4714 0.32 +0.4 76,737 - GFF4714 0.32 +0.5 76,737 - GFF4714 0.32 +0.0 76,826 + GFF4714 0.44 -1.1 76,826 + GFF4714 0.44 -0.9 76,827 - GFF4714 0.44 -0.4 76,827 - GFF4714 0.44 -0.2 76,827 - GFF4714 0.44 -1.1 76,827 - GFF4714 0.44 +0.4 76,827 - GFF4714 0.44 -0.7 76,997 + GFF4714 0.65 +0.4 76,997 + GFF4714 0.65 -0.5 76,997 + GFF4714 0.65 -0.7 76,998 - GFF4714 0.65 +0.5 76,998 - GFF4714 0.65 -0.0 76,998 - GFF4714 0.65 -0.5 76,998 - GFF4714 0.65 -0.5 76,998 - GFF4714 0.65 -1.7 77,212 + +0.1 77,212 + -0.4 77,213 - -0.4 77,326 + +0.5 77,327 - -0.5 77,327 - +0.1 77,327 - +0.4 77,344 + -1.0 77,344 + +0.1 77,344 + -0.4 77,345 - -1.1 77,345 - +0.8 77,345 - -0.6 77,345 - -0.8 77,345 - +1.6 77,392 + GFF4715 0.11 +0.1 77,392 + GFF4715 0.11 +0.1 77,392 + GFF4715 0.11 +0.3 77,392 + GFF4715 0.11 +0.4 77,392 + GFF4715 0.11 +1.0 77,393 - GFF4715 0.11 -0.7 77,393 - GFF4715 0.11 +0.3 77,393 - GFF4715 0.11 +0.5 77,393 - GFF4715 0.11 -0.4 77,393 - GFF4715 0.11 -0.3 77,393 - GFF4715 0.11 -0.1 77,393 - GFF4715 0.11 +0.1 77,393 - GFF4715 0.11 -0.7 77,393 - GFF4715 0.11 +0.2 77,393 - GFF4715 0.11 +0.9 77,393 - GFF4715 0.11 -0.3 77,407 + GFF4715 0.12 +0.6 77,407 + GFF4715 0.12 -0.0 77,407 + GFF4715 0.12 -0.7 77,407 + GFF4715 0.12 +0.8 77,407 + GFF4715 0.12 -0.4 77,408 - GFF4715 0.12 -0.9 77,419 + GFF4715 0.13 -1.0 77,419 + GFF4715 0.13 -0.3 77,419 + GFF4715 0.13 -0.2 77,419 + GFF4715 0.13 +0.1 77,420 - GFF4715 0.13 -1.4 77,420 - GFF4715 0.13 +0.3 77,420 - GFF4715 0.13 +0.2 77,420 - GFF4715 0.13 -0.6 77,420 - GFF4715 0.13 +1.3 77,420 - GFF4715 0.13 -0.5 77,488 + GFF4715 0.19 +0.7 77,489 - GFF4715 0.19 -0.3 77,489 - GFF4715 0.19 +0.6 77,489 - GFF4715 0.19 +1.3 77,560 + GFF4715 0.26 -0.6 77,560 + GFF4715 0.26 -0.5 77,560 + GFF4715 0.26 -0.1 77,560 + GFF4715 0.26 +0.3 77,560 + GFF4715 0.26 -0.0 77,560 + GFF4715 0.26 -0.2 77,560 + GFF4715 0.26 -0.2 77,560 + GFF4715 0.26 +0.6 77,560 + GFF4715 0.26 -0.2 77,561 - GFF4715 0.26 -0.4 77,596 + GFF4715 0.29 +0.0 77,596 + GFF4715 0.29 +0.2 77,596 + GFF4715 0.29 -0.4 77,596 + GFF4715 0.29 -0.1 77,596 + GFF4715 0.29 +0.7 77,596 + GFF4715 0.29 -0.1 77,596 + GFF4715 0.29 +1.3 77,596 + GFF4715 0.29 +0.3 77,597 - GFF4715 0.29 +0.7 77,597 - GFF4715 0.29 -0.7 77,597 - GFF4715 0.29 -0.1 77,597 - GFF4715 0.29 -0.2 77,597 - GFF4715 0.29 +1.6 77,597 - GFF4715 0.29 +0.2 77,597 - GFF4715 0.29 -1.5 77,597 - GFF4715 0.29 -0.9 77,597 - GFF4715 0.29 -0.7 77,597 - GFF4715 0.29 +0.1 77,597 - GFF4715 0.29 -0.2 77,728 + GFF4715 0.40 -0.3 77,728 + GFF4715 0.40 -0.2 77,729 - GFF4715 0.40 +0.3 77,729 - GFF4715 0.40 -1.1 77,746 + GFF4715 0.42 +0.2 77,746 + GFF4715 0.42 +0.2 77,747 - GFF4715 0.42 -1.4 77,747 - GFF4715 0.42 +0.1 77,747 - GFF4715 0.42 -0.6 77,747 - GFF4715 0.42 +0.8 78,043 + GFF4715 0.68 +0.6 78,043 + GFF4715 0.68 -0.7 78,043 + GFF4715 0.68 -0.2 78,043 + GFF4715 0.68 -0.1 78,043 + GFF4715 0.68 -0.0 78,208 + GFF4715 0.83 +0.4 78,208 + GFF4715 0.83 +0.2 78,208 + GFF4715 0.83 -0.5 78,208 + GFF4715 0.83 -2.1 78,209 - GFF4715 0.83 +0.7 78,209 - GFF4715 0.83 -0.3 78,209 - GFF4715 0.83 -0.0 78,209 - GFF4715 0.83 +0.3 78,209 - GFF4715 0.83 -0.2 78,209 - GFF4715 0.83 +0.4 78,209 - GFF4715 0.83 +0.2 78,209 - GFF4715 0.83 -0.9 78,229 + GFF4715 0.85 +0.7 78,229 + GFF4715 0.85 -0.9 78,229 + GFF4715 0.85 -0.3 78,230 - GFF4715 0.85 -1.0 78,230 - GFF4715 0.85 -0.4 78,230 - GFF4715 0.85 -0.4 78,230 - GFF4715 0.85 -0.2 78,230 - GFF4715 0.85 -0.9 78,230 - GFF4715 0.85 +0.3 78,259 + GFF4715 0.87 -0.9 78,260 - GFF4715 0.87 -1.0 78,260 - GFF4715 0.87 +1.4 78,260 - GFF4715 0.87 -0.4 78,260 - GFF4715 0.87 +0.1 78,260 - GFF4715 0.87 +0.7 78,447 - -0.6 78,510 + -0.4 78,511 - -0.4 78,511 - -1.6 78,518 + -0.2 78,518 + +0.6 78,518 + +0.1 78,518 + -0.3 78,518 + -0.4 78,518 + +0.6 78,518 + -0.5 78,518 + +0.3 78,518 + +0.1 78,518 + +0.7 78,518 + -0.5 78,518 + -0.2 78,518 + +0.3 78,518 + -0.6 78,518 + -0.4 78,518 + -0.4 78,519 - +0.7 78,519 - -0.2 78,519 - -1.4 78,519 - +0.6 78,519 - -0.7 78,519 - -0.8 78,519 - -0.4 78,519 - -0.3 78,519 - +1.2 78,519 - +0.8 78,519 - -0.4 78,519 - -0.5 78,519 - +0.7 78,520 + +0.6 78,521 - +0.2 78,531 + -1.1 78,531 + +0.4 78,531 + -1.7 78,531 + +1.6 78,532 - +0.3 78,532 - -0.3 78,702 + GFF4716 0.18 -0.2 78,795 + GFF4716 0.29 +0.1 78,795 + GFF4716 0.29 -1.2 78,795 + GFF4716 0.29 +0.1 78,795 + GFF4716 0.29 -0.7 78,796 - GFF4716 0.30 -0.2 78,796 - GFF4716 0.30 -0.1 78,927 + GFF4716 0.45 +0.4 78,927 + GFF4716 0.45 +0.0 78,927 + GFF4716 0.45 -1.6 78,927 + GFF4716 0.45 -0.2 78,927 + GFF4716 0.45 -0.4 78,927 + GFF4716 0.45 -0.6 78,927 + GFF4716 0.45 -0.3 78,927 + GFF4716 0.45 -0.3 78,927 + GFF4716 0.45 -0.2 78,927 + GFF4716 0.45 -0.0 78,928 - GFF4716 0.45 -0.3 78,928 - GFF4716 0.45 +0.2 78,928 - GFF4716 0.45 -1.4 78,928 - GFF4716 0.45 +0.6 78,928 - GFF4716 0.45 -0.5 78,928 - GFF4716 0.45 +0.7 78,928 - GFF4716 0.45 -0.5 78,928 - GFF4716 0.45 -0.4 79,185 + GFF4716 0.76 +1.0 79,185 + GFF4716 0.76 -0.4 79,185 + GFF4716 0.76 +0.2 79,185 + GFF4716 0.76 -0.7 79,185 + GFF4716 0.76 -0.3 79,185 + GFF4716 0.76 -0.6 79,185 + GFF4716 0.76 +0.4 79,185 + GFF4716 0.76 -1.6 79,185 + GFF4716 0.76 -0.1 79,185 + GFF4716 0.76 -0.0 79,185 + GFF4716 0.76 -0.7 79,185 + GFF4716 0.76 -0.4 79,185 + GFF4716 0.76 -0.1 79,185 + GFF4716 0.76 +0.5 79,185 + GFF4716 0.76 -0.2 79,185 + GFF4716 0.76 -0.8 79,186 - GFF4716 0.76 +0.1 79,186 - GFF4716 0.76 -0.2 79,186 - GFF4716 0.76 +0.3 79,186 - GFF4716 0.76 -1.1 79,186 - GFF4716 0.76 -0.6 79,186 - GFF4716 0.76 +1.3 79,186 - GFF4716 0.76 -0.6 79,186 - GFF4716 0.76 -0.4 79,186 - GFF4716 0.76 +0.7 79,186 - GFF4716 0.76 -0.3 79,186 - GFF4716 0.76 -1.0 79,186 - GFF4716 0.76 +1.4 79,186 - GFF4716 0.76 +0.2 79,186 - GFF4716 0.76 +0.3 79,186 - GFF4716 0.76 -0.5 79,186 - GFF4716 0.76 -1.2 79,186 - GFF4716 0.76 -1.0 79,186 - GFF4716 0.76 +0.1 79,203 + GFF4716 0.78 -0.3
Or see this region's nucleotide sequence