Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4690 and GFF4691 overlap by 11 nucleotides GFF4691 and GFF4692 are separated by 211 nucleotides
GFF4690 - Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA, at 50,774 to 53,986
GFF4690
GFF4691 - Cobalt/zinc/cadmium resistance protein CzcD, at 53,976 to 54,887
GFF4691
GFF4692 - Catalase-peroxidase KatG (EC 1.11.1.21), at 55,099 to 57,357
GFF4692
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 53.366 kb on + strand, within GFF4690 at 53.367 kb on - strand, within GFF4690 at 53.390 kb on + strand, within GFF4690 at 53.877 kb on - strand at 53.923 kb on + strand at 53.924 kb on - strand at 54.051 kb on + strand at 54.052 kb on - strand at 54.052 kb on - strand at 54.052 kb on - strand at 54.197 kb on + strand, within GFF4691 at 54.197 kb on + strand, within GFF4691 at 54.208 kb on - strand, within GFF4691 at 54.211 kb on - strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.279 kb on + strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.746 kb on - strand, within GFF4691 at 54.746 kb on - strand, within GFF4691 at 54.943 kb on + strand at 54.943 kb on + strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.945 kb on + strand at 54.945 kb on + strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.249 kb on + strand at 55.351 kb on + strand, within GFF4692 at 55.351 kb on + strand, within GFF4692 at 55.352 kb on - strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.397 kb on - strand, within GFF4692 at 55.397 kb on - strand, within GFF4692 at 55.522 kb on + strand, within GFF4692 at 55.522 kb on + strand, within GFF4692 at 55.523 kb on - strand, within GFF4692 at 55.523 kb on - strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.652 kb on - strand, within GFF4692 at 55.652 kb on - strand, within GFF4692 at 55.693 kb on + strand, within GFF4692 at 55.816 kb on + strand, within GFF4692 at 55.817 kb on - strand, within GFF4692 at 55.817 kb on - strand, within GFF4692 at 55.817 kb on - strand, within GFF4692
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 53,366 + GFF4690 0.81 -1.6 53,367 - GFF4690 0.81 +1.0 53,390 + GFF4690 0.81 -0.0 53,877 - +0.3 53,923 + +1.1 53,924 - -0.6 54,051 + -0.7 54,052 - +0.2 54,052 - -0.1 54,052 - +0.7 54,197 + GFF4691 0.24 -0.4 54,197 + GFF4691 0.24 +0.4 54,208 - GFF4691 0.25 -0.2 54,211 - GFF4691 0.26 -1.0 54,270 + GFF4691 0.32 -2.4 54,270 + GFF4691 0.32 +0.1 54,270 + GFF4691 0.32 -0.4 54,270 + GFF4691 0.32 -0.5 54,271 - GFF4691 0.32 +0.4 54,271 - GFF4691 0.32 -0.2 54,271 - GFF4691 0.32 -0.4 54,271 - GFF4691 0.32 -0.4 54,271 - GFF4691 0.32 +0.2 54,271 - GFF4691 0.32 -0.9 54,271 - GFF4691 0.32 -0.3 54,271 - GFF4691 0.32 -0.8 54,271 - GFF4691 0.32 -1.2 54,271 - GFF4691 0.32 -1.2 54,279 + GFF4691 0.33 -1.5 54,427 - GFF4691 0.49 -0.1 54,427 - GFF4691 0.49 -0.7 54,427 - GFF4691 0.49 -0.3 54,745 + GFF4691 0.84 +0.2 54,745 + GFF4691 0.84 -0.0 54,745 + GFF4691 0.84 -0.5 54,745 + GFF4691 0.84 -0.1 54,746 - GFF4691 0.84 -0.3 54,746 - GFF4691 0.84 +1.4 54,943 + -0.7 54,943 + -0.3 54,944 - +0.5 54,944 - -0.6 54,944 - +0.5 54,944 - -0.4 54,945 + -1.2 54,945 + +1.6 54,946 - -0.3 54,946 - -0.4 54,946 - +0.4 54,946 - -0.5 54,946 - +1.1 55,029 - +0.3 55,029 - -0.1 55,029 - -0.6 55,029 - +0.6 55,249 + +2.6 55,351 + GFF4692 0.11 +0.4 55,351 + GFF4692 0.11 -0.0 55,352 - GFF4692 0.11 +0.3 55,396 + GFF4692 0.13 -0.0 55,396 + GFF4692 0.13 -0.2 55,396 + GFF4692 0.13 -0.4 55,397 - GFF4692 0.13 -0.7 55,397 - GFF4692 0.13 -1.3 55,522 + GFF4692 0.19 -0.7 55,522 + GFF4692 0.19 +4.0 55,523 - GFF4692 0.19 +0.7 55,523 - GFF4692 0.19 +0.1 55,651 + GFF4692 0.24 +0.4 55,651 + GFF4692 0.24 -0.2 55,651 + GFF4692 0.24 -0.0 55,652 - GFF4692 0.24 +0.2 55,652 - GFF4692 0.24 -1.1 55,693 + GFF4692 0.26 -0.5 55,816 + GFF4692 0.32 -1.2 55,817 - GFF4692 0.32 -0.5 55,817 - GFF4692 0.32 +0.2 55,817 - GFF4692 0.32 -0.7
Or see this region's nucleotide sequence