Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4629 and GFF4628 overlap by 36 nucleotides GFF4628 and GFF4630 are separated by 146 nucleotides GFF4630 and GFF4631 are separated by 3 nucleotides
GFF4629 - Glycosyl transferase, group 2 family, at 269,784 to 271,535
GFF4629
GFF4628 - hypothetical protein, at 271,500 to 271,850
GFF4628
GFF4630 - O-antigen export system permease protein RfbD, at 271,997 to 272,800
GFF4630
GFF4631 - ABC transporter, at 272,804 to 273,505
GFF4631
Position (kb) 271
272 Strain fitness (log2 ratio) -1
0
1
2 at 271.641 kb on + strand, within GFF4628 at 271.761 kb on + strand, within GFF4628 at 271.761 kb on + strand, within GFF4628 at 271.761 kb on + strand, within GFF4628 at 271.762 kb on - strand, within GFF4628 at 271.762 kb on - strand, within GFF4628 at 271.766 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.796 kb on + strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.797 kb on - strand, within GFF4628 at 271.848 kb on + strand at 271.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 271,641 + GFF4628 0.40 -0.3 271,761 + GFF4628 0.74 +0.3 271,761 + GFF4628 0.74 -1.2 271,761 + GFF4628 0.74 -0.1 271,762 - GFF4628 0.75 +0.4 271,762 - GFF4628 0.75 +0.4 271,766 + GFF4628 0.76 -0.2 271,796 + GFF4628 0.84 +0.1 271,796 + GFF4628 0.84 -1.1 271,796 + GFF4628 0.84 -0.9 271,796 + GFF4628 0.84 -1.2 271,796 + GFF4628 0.84 -1.6 271,796 + GFF4628 0.84 -0.1 271,796 + GFF4628 0.84 +2.4 271,796 + GFF4628 0.84 -0.5 271,797 - GFF4628 0.85 +0.4 271,797 - GFF4628 0.85 +1.2 271,797 - GFF4628 0.85 +0.4 271,797 - GFF4628 0.85 +1.8 271,797 - GFF4628 0.85 +0.4 271,797 - GFF4628 0.85 +0.2 271,797 - GFF4628 0.85 -0.6 271,797 - GFF4628 0.85 -0.4 271,797 - GFF4628 0.85 +0.3 271,797 - GFF4628 0.85 -0.8 271,797 - GFF4628 0.85 +0.8 271,797 - GFF4628 0.85 +0.7 271,797 - GFF4628 0.85 -0.8 271,797 - GFF4628 0.85 +0.8 271,797 - GFF4628 0.85 +0.5 271,797 - GFF4628 0.85 +0.4 271,797 - GFF4628 0.85 +0.3 271,848 + -0.9 271,986 + -1.5
Or see this region's nucleotide sequence