Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4586 and GFF4587 are separated by 19 nucleotides GFF4587 and GFF4588 are separated by 69 nucleotides GFF4588 and GFF4589 are separated by 105 nucleotides
GFF4586 - no description, at 227,602 to 228,063
GFF4586
GFF4587 - Dienelactone hydrolase family protein, at 228,083 to 228,910
GFF4587
GFF4588 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 228,980 to 229,957
GFF4588
GFF4589 - no description, at 230,063 to 231,118
GFF4589
Position (kb) 228
229
230 Strain fitness (log2 ratio) -1
0
1
2 at 227.990 kb on + strand, within GFF4586 at 227.990 kb on + strand, within GFF4586 at 227.991 kb on - strand, within GFF4586 at 228.025 kb on + strand at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.176 kb on + strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.177 kb on - strand, within GFF4587 at 228.284 kb on + strand, within GFF4587 at 228.285 kb on - strand, within GFF4587 at 228.285 kb on - strand, within GFF4587 at 229.209 kb on - strand, within GFF4588 at 229.247 kb on + strand, within GFF4588 at 229.295 kb on + strand, within GFF4588 at 229.295 kb on + strand, within GFF4588 at 229.296 kb on - strand, within GFF4588 at 229.337 kb on + strand, within GFF4588 at 229.691 kb on + strand, within GFF4588 at 229.692 kb on - strand, within GFF4588 at 229.692 kb on - strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.715 kb on + strand, within GFF4588 at 229.716 kb on - strand, within GFF4588 at 229.716 kb on - strand, within GFF4588 at 229.748 kb on - strand, within GFF4588 at 229.760 kb on + strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 229.761 kb on - strand, within GFF4588 at 230.204 kb on + strand, within GFF4589 at 230.204 kb on + strand, within GFF4589 at 230.205 kb on - strand, within GFF4589 at 230.205 kb on - strand, within GFF4589 at 230.207 kb on + strand, within GFF4589 at 230.234 kb on - strand, within GFF4589 at 230.379 kb on - strand, within GFF4589 at 230.379 kb on - strand, within GFF4589 at 230.453 kb on + strand, within GFF4589 at 230.453 kb on + strand, within GFF4589 at 230.454 kb on - strand, within GFF4589 at 230.454 kb on - strand, within GFF4589 at 230.586 kb on - strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.858 kb on + strand, within GFF4589 at 230.859 kb on - strand, within GFF4589 at 230.859 kb on - strand, within GFF4589 at 230.859 kb on - strand, within GFF4589 at 230.859 kb on - strand, within GFF4589
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 227,990 + GFF4586 0.84 -0.5 227,990 + GFF4586 0.84 -0.4 227,991 - GFF4586 0.84 +1.9 228,025 + -0.4 228,176 + GFF4587 0.11 -0.4 228,176 + GFF4587 0.11 -0.7 228,176 + GFF4587 0.11 -0.1 228,177 - GFF4587 0.11 -0.4 228,177 - GFF4587 0.11 +0.7 228,284 + GFF4587 0.24 +0.7 228,285 - GFF4587 0.24 -0.6 228,285 - GFF4587 0.24 +0.3 229,209 - GFF4588 0.23 -0.6 229,247 + GFF4588 0.27 +1.5 229,295 + GFF4588 0.32 -0.1 229,295 + GFF4588 0.32 -0.4 229,296 - GFF4588 0.32 -0.3 229,337 + GFF4588 0.37 -0.1 229,691 + GFF4588 0.73 +0.2 229,692 - GFF4588 0.73 +0.1 229,692 - GFF4588 0.73 -0.0 229,715 + GFF4588 0.75 +0.5 229,715 + GFF4588 0.75 +0.4 229,715 + GFF4588 0.75 -0.2 229,716 - GFF4588 0.75 -0.1 229,716 - GFF4588 0.75 -0.6 229,748 - GFF4588 0.79 -0.9 229,760 + GFF4588 0.80 -0.2 229,761 - GFF4588 0.80 -0.2 229,761 - GFF4588 0.80 +0.8 229,761 - GFF4588 0.80 -1.1 229,761 - GFF4588 0.80 +1.9 229,761 - GFF4588 0.80 +0.0 229,761 - GFF4588 0.80 -0.0 230,204 + GFF4589 0.13 +0.9 230,204 + GFF4589 0.13 -1.1 230,205 - GFF4589 0.13 -0.6 230,205 - GFF4589 0.13 +0.1 230,207 + GFF4589 0.14 -0.1 230,234 - GFF4589 0.16 +0.4 230,379 - GFF4589 0.30 -1.2 230,379 - GFF4589 0.30 -0.1 230,453 + GFF4589 0.37 -0.4 230,453 + GFF4589 0.37 -1.0 230,454 - GFF4589 0.37 +1.4 230,454 - GFF4589 0.37 -0.2 230,586 - GFF4589 0.50 -0.2 230,858 + GFF4589 0.75 +0.2 230,858 + GFF4589 0.75 +0.0 230,858 + GFF4589 0.75 -1.4 230,858 + GFF4589 0.75 +0.1 230,858 + GFF4589 0.75 -0.1 230,858 + GFF4589 0.75 +0.8 230,858 + GFF4589 0.75 -1.0 230,858 + GFF4589 0.75 +0.7 230,859 - GFF4589 0.75 +0.3 230,859 - GFF4589 0.75 +0.7 230,859 - GFF4589 0.75 -0.4 230,859 - GFF4589 0.75 -1.4
Or see this region's nucleotide sequence